Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2652 ATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATCACTACTGCCCCATCTCGCTCTCATTTCCCTTCTTCTTCCTCAATTCCCCACCATGATCTCTCCTCCTCCACGGCCGCCGCCTCCGCCTTCCGCCACCACCATAATCCCTACGACCTCATCATGATGATGCCACGTGACACTCAGCTACCCGACTTTCGCTCCGATTCCGCCACCACACCACCCGCCATCGTCTCCGCTCAGCCAGGTCCCTCCGCTTTCGAGCTCGAAACCGCCTCCATCGCCGCCGACTGCGCCACCGCTCGATGGCCTCGCCAAGAAACTCTTACTCTCTTGGATATCAGATCTCGACTTGATTCTAAGTTCAAGGAAGCCAACCAAAAAGGCCCCCTTTGGGATGAAGTTTCTAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAAAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAAACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTTAGGCAGTTGGAAGCTCTCTATGGTGAAACAAGCAATTCCCCTTCACTTCCAGATTCCCATTTTGTTGGAGACACCAACCTTAGATTCCAACAGAACGGGACCAACAACCCGACTGCGGCACCTCCAATGAGCCACGAAGCTCACCAGAAGCATTACTGCGATAGCCTCAGCCTCTCGAACACGTCAGAGTTCGAAACCTCGGCCTCGTCAGATGGCAACGACGACCCCAGCTCGGTTGGCATTATGGACAACGATTCAATGGAGAAGAGGAGGAAGAAGCGAGGCGGGAAATGCTGGAAGGCGAAAATCAAACAGTTCATCGACTCGCAAATGAGGAAGCTAATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGAGAGAATGATTCGCGAAGAGGAATGGAGGAGACAAGAAGTGTCAAGAATGGATAGGGAGAGAAGCTTTTGGGAAAAGGAGAGAGCATGGATAGAATCTAGAGATGCTGCATTAATGGATGCATTACAAAGGCTAACAGGACGAGAATTGAGAGATAATCAATACAACTCCTCACCCGACCTCGGATTAATCGTAGCCGAGCGTCATAGAAATAATAATGAGAACCAAAACGAGGATGGGAGCGAAATACTAAACAACAACACAGCTAGAGAATTACTAGCAGACAACAATAATTACCAAAGGAAAATAATAGACAATCAAGGCAACAAGAAACGCAAGGAGAATTCAACATCAACAGCCACCACCTACAATCTTTACTTCCAACAAACAGATTCCACCCTTTACAGTCGTGGCGGTGGCCGTGGCAGTGGCGGACCGTACGGCGGTGCCACCGACATCAAAGAACAAAGTCCAAACAGTTCAAACGTGGGCGGTGGTGGCGGCGGCGGCAGCGTGCAAGATAATTGCTTTCGCTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGGTTTATGGGAAAATTTTGGTCTTAAACTCAACAATGGAAGTGACCAAACTTGA 1575 47.68 MEMDDQYALSDLRHLITTAPSRSHFPSSSSIPHHDLSSSTAAASAFRHHHNPYDLIMMMPRDTQLPDFRSDSATTPPAIVSAQPGPSAFELETASIAADCATARWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETSNSPSLPDSHFVGDTNLRFQQNGTNNPTAAPPMSHEAHQKHYCDSLSLSNTSEFETSASSDGNDDPSSVGIMDNDSMEKRRKKRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKERMIREEEWRRQEVSRMDRERSFWEKERAWIESRDAALMDALQRLTGRELRDNQYNSSPDLGLIVAERHRNNNENQNEDGSEILNNNTARELLADNNNYQRKIIDNQGNKKRKENSTSTATTYNLYFQQTDSTLYSRGGGRGSGGPYGGATDIKEQSPNSSNVGGGGGGGSVQDNCFRFLMGEGDQSQSGLWENFGLKLNNGSDQT 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33339498 33342279 + CmPI595203_10g026520.1 Cmu10g2652 428182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2652 524 Coils Coil 299 326 - -
Cmu10g2652 524 CDD GT1 104 169 - -
Cmu10g2652 524 Pfam Myb/SANT-like DNA-binding domain 104 190 IPR044822 -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 247 280 - -
Cmu10g2652 524 Gene3D - 105 167 - -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 211 226 - -
Cmu10g2652 524 PANTHER FI21293P1 92 434 - -
Cmu10g2652 524 FunFam trihelix transcription factor PTL-like 105 167 - -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 451 487 - -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 247 264 - -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 211 232 - -
Cmu10g2652 524 ProSiteProfiles Myb-like domain profile. 104 162 IPR001005 -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 471 486 - -
Cmu10g2652 524 MobiDBLite consensus disorder prediction 422 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2214 Cmu-Chr5:31661348 Cmu10g2652 Cmu-Chr10:33339498 5.10E-55 dispersed
Cmu08g0331 Cmu-Chr8:9317585 Cmu10g2652 Cmu-Chr10:33339498 4.80E-34 dispersed
Cmu08g0333 Cmu-Chr8:9462332 Cmu10g2652 Cmu-Chr10:33339498 3.80E-21 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7058 PF13837 Myb_DNA-bind_4 2.40E-19 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2652 - - - 0.0