Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2658 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACCAGGGAACCGGGTTTGAAGAAGCCGCGACTGGCCGATGAGGCTGAACGCGGTGGGAACATCAATGGCCGGCCGTTTCCGCAGAGGCCAGTTGTTTCCGGGAACAATATTGTGCAACCACCCAGATTTCGAGCAAGTGATAGGGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAACCTCAGCCACCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACCGCCCTTGCGGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTTCAGGCTGCGAAGGCGATCTCTGCCACCGTTTACGCCAACATTCTCGAGGTTCCTAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTATATAAAATACTTTGCAGCAAGACTACCGGAGGTATTCTGCAAAGCTTATAGGCAGGTTGACCCTTCTGTACATCCAAGTATGAGACATCTGTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATTGAGAAAGAACTTGGGTTCGTGCCTAGCGGTAGTTCTTCTGGGGCCATAACCTCCAAGCCAGATTTGCAGGCACAACGTCCAACTCCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGGCAGCGGCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGCTACTGGTGTGACAACAAATGTAAGTCAGGATGTAGCCCAAGCCAAAATTAATACTGGACGTCCATGGGCAGATGCTCCAATTAAAGTGCTTGACATTCAACGTCCCCTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGGATTTGCAGACTACGAATATGGTTCTGATCTTTCAAGGACATCGGGTGTTGGAAGAAGGGTCGTTGATGAAGGGCGAGACAAACCTTGGTCTTCAGCTGGAAGCAATTTGGCTGAGAAACTATCTGGTCAAAGAAATGGGTTCAACATCAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTTCACGTCTACTGCCCGTGCAAAATTTTTCAAGCAGCAGCAGCAACAGAGTATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGATGACAGGTCATGGTGCACCTGCTATCGCCGGTAGCACTAGAAAAGATCAATGGACTCCTGAGGATTCGGATAATTCGGGTATGGACAATAAGCCATTAAGTGTACGGGATACTGGGGCAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAACAAAGGTCTACGTGGCAACTGCAAGAGTCAATATCTCTGGATGGGCTAAGAGGCGGGGTTCCTAGAAAGAATTCAGGTCAGTCAGGAGGTTATAGTGCTACTCTTACTGCACTGTCAGGTGCTAATTCTTCATCTAATATTGGGGCTTCAGGACATGGGTTTCTTAATAAAGGAGGTTCAGGGCCCCTTGGGACTGTAAGCCATCAAAGATTTCCATCACGAAGTGTTGCATTCCCATCTGGACAACCACCCTTGCACCAACGCCCCCCTTCACCATTGTTAGTGGATCATGTTCCTCATCAAATACATGACCATAAAACAACTTCATTTTCTAATCTTGATCCACGTAAAAGACATATGCAGGATGCTGCCCTTGGCCTGCATCCCAGCGTTCGACCAGATAATCTTCAAAAGCCCCTGCCTCATGACCTACAAGCTCCAGCTTTATCCATACCTGCGTCTCAACCTAGGCACCAGTTCTCTTTATCTGAGTCACTAAAACCTGATGTTACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCAGGCACCAATATTGGACCATCCTCATCAGCTGGGACAGTTCCAGATCATTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGACTTTTCTCCAACCATCCAATAACCAGTAGCATGCAGCAGAATATCGGCTTCCAAGATGTGGGAAATATGAAACCTCGCTCAAGCATTAAACCTCCGCTACCAAGCCGGTCTTCTCCTGCCCATACATTCGCAGAGCCAAAGATTCAGGGAGAATCCCCAGTAGGTCCTCCATCACTTGAAAGCCCATCAACTATGGTTAAGTTGTCTCGAACTAAGGAAGAAGAACCATCGTTGCCATCTGATCCACTCCCACCTTCATCTCCTATGAACAGTGCATCCACTGAAACTTCAAATGTGGTAAATGATGCTTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCAGCTTCAAAAGGAGAATTAACAAATAGTGTGACATCCCAGATGCCTTCACAGCATGAAAATTTGAAGTCAGGTGATGCTGTGGCTAGTTCTGTACCAGTTCCTTCCATCCCTGTTTCCTCTGCCAGTCACTCATCTATGAGACTTGAATCACCTTCAAAAGCTGCCGCTAGGAGCTCTAGTAGTCCACCTCCATCTGCCACAACTGAAATAAAGAACCTCATAGGCTTTGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGATGATATTCCATACCAATGTAAGATCTGTGGTCTTAGACTGAAATGTGAAGAACAGTTGGAAACTCACTCACGGTGGCACACATTAAGAGCTGAGGCAAACAATTCTAGTAGCACACCAAGAAGATGGTATCCAAGTTCAAGTGATTGGATTTCTGGAAATGCGAGACTTCTACTTGATGCTGCAACTTCTCTGGACGAGTTCAACATGATGGAAGAAGATAATGAGCCAATGGTTCCTGCGGATGAAGATCAATTTGCCTGTGTTATATGTGGTGAACTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAATTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGTGGGTAGCGAGGTAGGATGCACAAATGAACAAGTTGCCAGAGGACCCATTGTGCACACGAATTGTTTGACTGAAAGTTCAGTATATGACGTGGGAGTGGCAACTGATATTAAGATGGAAATGGATGGAGTGGTAGCTCTATACTGCAAAATTTTCACTTAA 3249 45.58 MEMESSRRPFDRTREPGLKKPRLADEAERGGNINGRPFPQRPVVSGNNIVQPPRFRASDRDSGSSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVYANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHPSMRHLFGTWKGVFPPQTLQIIEKELGFVPSGSSSGAITSKPDLQAQRPTPHSIHVNPKYIERQRLQQSGRVKGMTSDATGVTTNVSQDVAQAKINTGRPWADAPIKVLDIQRPLRDAPNDMAQEKNITAGFADYEYGSDLSRTSGVGRRVVDEGRDKPWSSAGSNLAEKLSGQRNGFNIKLGYENYPAPKSANTGSRLLPVQNFSSSSSNRVLSTNWKNSEEEEFMWGEMNSMMTGHGAPAIAGSTRKDQWTPEDSDNSGMDNKPLSVRDTGASVDREASSDSQSSEQRELGDSGQQRSTWQLQESISLDGLRGGVPRKNSGQSGGYSATLTALSGANSSSNIGASGHGFLNKGGSGPLGTVSHQRFPSRSVAFPSGQPPLHQRPPSPLLVDHVPHQIHDHKTTSFSNLDPRKRHMQDAALGLHPSVRPDNLQKPLPHDLQAPALSIPASQPRHQFSLSESLKPDVTQSELSSQHAVSIPGTNIGPSSSAGTVPDHLPAEILGEPSTSSLLAAVMKSGLFSNHPITSSMQQNIGFQDVGNMKPRSSIKPPLPSRSSPAHTFAEPKIQGESPVGPPSLESPSTMVKLSRTKEEEPSLPSDPLPPSSPMNSASTETSNVVNDASSPISNLLSSLVAKGLISASKGELTNSVTSQMPSQHENLKSGDAVASSVPVPSIPVSSASHSSMRLESPSKAAARSSSSPPPSATTEIKNLIGFEFSSHVIRKFHPSVISGLFDDIPYQCKICGLRLKCEEQLETHSRWHTLRAEANNSSSTPRRWYPSSSDWISGNARLLLDAATSLDEFNMMEEDNEPMVPADEDQFACVICGELFEDFYSQELGNWMFKGAMYITIPSVGSEVGCTNEQVARGPIVHTNCLTESSVYDVGVATDIKMEMDGVVALYCKIFT 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33382563 33389354 - CmPI595203_10g026580.1 Cmu10g2658 428188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2658 1082 CDD CID_Pcf11 83 195 IPR047415 -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 825 840 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 825 882 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 1 29 - -
Cmu10g2658 1082 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Cmu10g2658 1082 Gene3D - 73 203 IPR008942 -
Cmu10g2658 1082 ProSiteProfiles Zinc finger C2H2 type domain profile. 916 943 IPR013087 -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 535 549 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 782 796 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 410 504 - -
Cmu10g2658 1082 SMART 558neu5 81 203 IPR006569 -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 1 78 - -
Cmu10g2658 1082 ProSitePatterns Zinc finger C2H2 type domain signature. 918 938 IPR013087 -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 454 484 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 849 882 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 713 796 - -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 533 562 - -
Cmu10g2658 1082 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1069 IPR045154 GO:0000993(InterPro)|GO:0000993(PANTHER)|GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005737(PANTHER)|GO:0005849(PANTHER)|GO:0006369(InterPro)|GO:0006369(PANTHER)|GO:0006378(PANTHER)|GO:0031124(InterPro)
Cmu10g2658 1082 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Cmu10g2658 1082 MobiDBLite consensus disorder prediction 64 78 - -
Cmu10g2658 1082 Pfam CID domain 88 196 IPR006569 -
Cmu10g2658 1082 SUPERFAMILY ENTH/VHS domain 78 202 IPR008942 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0900 Cmu-Chr3:3537787 Cmu10g2658 Cmu-Chr10:33382563 1.20E-74 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2658 K14400 - csv:101223169 1853.18