Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2661 ATGTACGATGTGAGTGAAAGCGCAGAGAGAGATCGAATCAAGGATGGAGATCGGATCGAGGAGAAAGCAGTGAAGAGCCAAAGATGGGAGAAAGCGGGAAGGAAGACGTGTTTCCGCCCATCTCAGTTGATGAGTCTTCGGTACTACCAATCTCGTACTCTCAACCGGCTCGAACCAGGTCCAAACGGATTTCAGGTGATCGGAATTCTCAGAATCTCGATGGAAATGCCCGGCAGGAGGTTGAACTATACGCTTCTCAGTCAAATTCCAGACGACCAATACAGTGGCGGTGTTGCCGGAGTTTCGACAACGTTTAAAGAAACATCATCGGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGCTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGCAATATGTACTCGGCGTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTATGCACCGACACCATCTACTACGGTGGCTAATGAGACGGATGGGTTTGGTTGTACGCACGATGATGTGCTTAGAATTGGAGGCGATTCGAGAGCACAGATGGCCGAGATGGCCGCTGGGGCTGGAGGATCTTCTGCTAAGACCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTTCGGCTTTCATCTGTGGCCACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATGAGCTCTGTTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCGTACTTTGACAAAGTTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTGTGGACTGTGTGCACGAGCCTGCCTGACAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCCAGTACAGATTCGTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAGGCATTTCTTGCAGCTCTATAACTACAGAAGAGGTTGTAGATCAGCTTGCAAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATGCGTTGGTGTCCATCTGGAGGGAGTGCAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTATTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCTCTTCTTTTCAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCATGCCATGATTCTTCTTCTTGTCTAGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTAATTGGCAATCCTGGTTGCTTATATGAGCCTGATTCTTTACTCAATGGTCCATCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGCCTGCCATTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAGTTGCTCAATGTTGTTTTCGATGAAGCTTCCTCATGTAATCACACAGAAATTACTGTGGATGGAGAAGATGGCGCACTCCCATTGTATTTAAAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGATAGTGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAACTCCCAAGACAGGGATTTCCAACTGTATAAACCACGTGATAATTCTCATAATCTTATACAACCAACTGTCCAGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAATCGTGGAAGTGTGCAGTCACTTTTGGATATGTCCCAGCCAAGGATGGATTCTACTATGGACTTAAGGTTTGCACCAGGAGGTCAGCTAATACCAAGCACTCGGAGTAAAACACTTCCCCTTGGTGCGGAGGATTTGGACATTCCATGGAGTGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGCGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAGATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCGGTGACCAAGCCACCAAACCTATCCATTGTCACGGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATAGATGAAACCCGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCACAGACGTGATCCTCCAATTGTTCATCGTGATTTAAAATCACCTAATCTTTTAGTTGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGTTTAAAGGCACGCACATTTCTTTCATCCAAATCCGCAGCTGGAACACCTGAATGGATGGCGCCAGAAGTACTACGTGATGAACCCTCAAATGAAAAGTCAGATGTTTACAGCTTTGGAGTGATCTTGTGGGAGTTGGCAACGTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTTAAGGGCAAAAGGCTTGACATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATTGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTTTCCACCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCACCTCAACAAGGTCGTGCAGACACACTCTCAGTTATGTGA 2832 45.94 MYDVSESAERDRIKDGDRIEEKAVKSQRWEKAGRKTCFRPSQLMSLRYYQSRTLNRLEPGPNGFQVIGILRISMEMPGRRLNYTLLSQIPDDQYSGGVAGVSTTFKETSSGEGKNDRRKLERGLDWEAAGDHRAGQQQQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDGFGCTHDDVLRIGGDSRAQMAEMAAGAGGSSAKTWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSMSSVEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQGISCSSITTEEVVDQLAKLVCRSLGGSVSGEDALVSIWRECSDNLKETLGSVVIPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEASSCNHTEITVDGEDGALPLYLKQFDRKFTNRSNQMLVTGDSDEKSILLHAKTSQPNSQDRDFQLYKPRDNSHNLIQPTVQVEDSIPLKYVPHINRGSVQSLLDMSQPRMDSTMDLRFAPGGQLIPSTRSKTLPLGAEDLDIPWSDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMRSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKGKRLDIPRDVNPKLASLIVACWADEPWKRPSFSTIMETLKPMTKQAPPQQGRADTLSVM 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33407916 33424578 - CmPI595203_10g026610.1 Cmu10g2661 428191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2661 943 ProSitePatterns Protein kinases ATP-binding region signature. 676 697 IPR017441 GO:0005524(InterPro)
Cmu10g2661 943 SUPERFAMILY Protein kinase-like (PK-like) 652 923 IPR011009 -
Cmu10g2661 943 Gene3D Phosphorylase Kinase; domain 1 663 748 - -
Cmu10g2661 943 FunFam Serine/threonine-protein kinase isoform 1 660 748 - -
Cmu10g2661 943 SMART serkin_6 670 927 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PANTHER SERINE-THREONINE PROTEIN KINASE 220 926 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu10g2661 943 Pfam Ethylene-responsive protein kinase Le-CTR1 266 470 - -
Cmu10g2661 943 Gene3D Transferase(Phosphotransferase) domain 1 749 937 - -
Cmu10g2661 943 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PRINTS Tyrosine kinase catalytic domain signature 894 916 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PRINTS Tyrosine kinase catalytic domain signature 831 841 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PRINTS Tyrosine kinase catalytic domain signature 850 872 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PRINTS Tyrosine kinase catalytic domain signature 744 757 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 PRINTS Tyrosine kinase catalytic domain signature 784 802 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 CDD STKc_MAP3K-like 676 923 - -
Cmu10g2661 943 ProSiteProfiles Protein kinase domain profile. 670 927 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 Pfam Protein tyrosine and serine/threonine kinase 671 923 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2661 943 FunFam Serine/threonine-protein kinase CTR1 749 933 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0437 Cmu-Chr6:4967122 Cmu10g2661 Cmu-Chr10:33407916 2.50E-90 dispersed
Cmu10g2661 Cmu-Chr10:33407916 Cmu11g1140 Cmu-Chr11:21537769 1.70E-45 dispersed
Cmu02g1770 Cmu-Chr2:31588829 Cmu10g2661 Cmu-Chr10:33407916 1.90E-70 transposed
Cmu03g2221 Cmu-Chr3:30804795 Cmu10g2661 Cmu-Chr10:33407916 5.50E-127 transposed
Cmu04g0690 Cmu-Chr4:21035389 Cmu10g2661 Cmu-Chr10:33407916 8.40E-22 transposed
Cmu05g1603 Cmu-Chr5:25763379 Cmu10g2661 Cmu-Chr10:33407916 1.70E-41 transposed
Cmu05g1823 Cmu-Chr5:28327169 Cmu10g2661 Cmu-Chr10:33407916 1.90E-116 transposed
Cmu06g0600 Cmu-Chr6:6813534 Cmu10g2661 Cmu-Chr10:33407916 5.60E-28 transposed
Cmu10g1271 Cmu-Chr10:5626310 Cmu10g2661 Cmu-Chr10:33407916 1.60E-21 transposed
Cmu11g1465 Cmu-Chr11:26872969 Cmu10g2661 Cmu-Chr10:33407916 1.90E-174 transposed
Cmu10g2661 Cmu-Chr10:33407916 Cmu04g1017 Cmu-Chr4:24758307 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75871 PF07714 PK_Tyr_Ser-Thr 2.60E-70 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2661 K14510 - csv:101208452 1650.57