Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2679 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTCTTTCTTCTGTTCTTTAGTCGTTTATGCTATTCACAGAAAACCTGCCCAAGCTGTGGCCTCTTTGAAGTTCCTTATCCTCTGAGTACCAATCCCAACTGTGGTGACTTAGACTATGCACTTCGTTGTGATTCTCATTCACAGAAACTCTACTTCGATGCACTCAATGGAAGTTCATATCCTATCCTCAAAATCAACGCTTCGAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTGCTGGCTCTTGTATTACTCAAGACATGTTGGTTAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCAAATACAATTTTTCTCTTGAACTGTTCTCCTCGCCTGCTGGTTTCGCCACTCAATTGCACTCCTTCAAGTCTCTGTCACCACTACTTGGCAAGTTCAGGACGAGTCGATGAAAAAAAAGCATTTCAGTGTGCAAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGTATGCCCTCAGCTTATAAGATAAGGCTTCATAACTCAGGCTGTAGAGCACTCAGGAGTATCCTCCATCTGGATGTAGAAAAGCCTGCAAACCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTCCTCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCATCGGATTGTCTTCCTGCGGGTGGTTCAAACAGTCGTTCTCGTTGCCTTTGTAGAAGGAGCTACTACTGGAATCATATTCTTGGAACATGCCTGAGAACGAATAGGAAGAGCATGGTTAGACTGAGCATAAAGCTGTCGGTGTGTCTCGTTTCCTTTTTCATTCTAGCTGCGGTCATAGCTCTAATTACAGTCAGGAAGTCCAGAACTTTCAGTAAACAGGAAAAGCTATGTAAAGAAAGAGAGGATATGTTGAATTTAAGCCATGGCGTTAGACCAGCTAGGATGTTTCATCTGAAAGAGATGAAGAAAGCAACAAATGAATTTTCGAAAGACAGAGTCCTAGGCAGTGGTGGCTTTGGAGAGGTTTATAAAGGTGAACTTCAAGATGGGACTATCGTAGCCGTGAAGTCGGCCAAAGTGGGTAATCTAAAGAGCACCGAACAAATACTCAACGAAGTCGGAATACTATCTCAAGTAAATCATAGGAATCTTGTGAAACTTATAGGTTGCTGTGTAGAAACTGAGCAACCATTGATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGATTCCTTCTTTCTTGGATTGGAGAAAAAGGCTGAAAATTGCTTCACAAACTGCTGAAGCATTAGCTTATCTGCATTCAGCTGCATATCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATTCTTTTAGATGATAAATTCAATGCTAAAGTCTCAGATTTTGGACTTTCTAGATTGGCTTTGCCAGGAATAAGCCATGTTTCAACTTGTGCACAGGGTACATTAGGTTACCTAGACCCAGAATACTATCGAAATTACCAATTAACAGATAAAAGTGATGTGTATAGTTTTGGAGTTGTTCTACTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACAAGAGATGAAAATTGTGTCAATCTAGCGATCTATGTGATCCAAAAAGTGCAAAATGGTGCATTCATTGACGCCATCGATAAACAGCTTATCAGTGATGATCCATCCAGCAATATACTAATCAGTGTGAAGCACTTCTTGGAGCTCGCACTCGCCTGTTTGAGGGAGAAGAAAGTGGAAAGGCCTTTCATGAAGGATGTACTCCAAGAACTTGAATACATAACTCAGATATTGGACAATCCAGAAATAGTTGCTGAAGAAGGTAAGTCTTAA 1917 41.37 MVTMKIPTPCLFGSYLFFLLFFSRLCYSQKTCPSCGLFEVPYPLSTNPNCGDLDYALRCDSHSQKLYFDALNGSSYPILKINASSQRLVIQPSPWVAGSCITQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSLCHHYLASSGRVDEKKAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRALRSILHLDVEKPANQWEEGLEIQWAPPPEPICRTQSDCTGASDCLPAGGSNSRSRCLCRRSYYWNHILGTCLRTNRKSMVRLSIKLSVCLVSFFILAAVIALITVRKSRTFSKQEKLCKEREDMLNLSHGVRPARMFHLKEMKKATNEFSKDRVLGSGGFGEVYKGELQDGTIVAVKSAKVGNLKSTEQILNEVGILSQVNHRNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKIPSFLDWRKRLKIASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDKFNAKVSDFGLSRLALPGISHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDENCVNLAIYVIQKVQNGAFIDAIDKQLISDDPSSNILISVKHFLELALACLREKKVERPFMKDVLQELEYITQILDNPEIVAEEGKS 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33567897 33569813 + CmPI595203_10g026790.1 Cmu10g2679 428209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2679 638 CDD STKc_IRAK 352 620 - -
Cmu10g2679 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 22 623 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Cmu10g2679 638 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247(InterPro)
Cmu10g2679 638 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524(InterPro)
Cmu10g2679 638 Gene3D Phosphorylase Kinase; domain 1 316 421 - -
Cmu10g2679 638 Gene3D Transferase(Phosphotransferase) domain 1 422 633 - -
Cmu10g2679 638 SUPERFAMILY Protein kinase-like (PK-like) 322 623 IPR011009 -
Cmu10g2679 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2679 638 SMART serkin_6 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2679 638 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2679 638 FunFam Wall-associated receptor kinase-like 20 422 631 - -
Cmu10g2679 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 320 421 - -
Cmu10g2679 638 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1515 Cmu-Chr2:28847249 Cmu10g2679 Cmu-Chr10:33567897 4.80E-33 dispersed
Cmu10g2679 Cmu-Chr10:33567897 Cmu11g0669 Cmu-Chr11:7376180 2.00E-162 dispersed
Cmu10g2679 Cmu-Chr10:33567897 Cmu04g0834 Cmu-Chr4:22858253 9.10E-152 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75873 PF07714 PK_Tyr_Ser-Thr 1.20E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2679 - - - 0.0