Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2680 ATGGGTACCCATGGCCGAAGCAGTGAGCGGAAGAGAGAGAAGAAATCATCTTCACGGAGACGCAGCAGAAGAAGGTCCGATGACTCTGAATCTGATTCAGACGACTCAGATAGCTGCGATTCATCTCCTGTGGCTAGCTCCCGGAAGCGCAGGGAAAGACGGGATGGTAGCAGAAGCAGCCACCGGAGTAAGCGACGGAGCTCCTCTCGTGGGCGGGATTCCGGTGACGATAGTTCAAATGATAGTTATGACAGTGATGATGGAGGTCGCAAGAAGATTAAATCTTCGAGGAAAGTTACCGAAGAGGAAATTAGCGAATACTTGGCCAAGAAAGCGCAGAAAAAGGCCTTGCGAGTTGCTAAGAAATTGAAGTCACAGACGGTTTCTGGTTATTCTAACGATTCGAATCCATTTGGCGATTCGAATCTGAATGAAAAATTTGTTTGGCGAAAGAAAATTGAGCGCGATGTTACTCAAGGCGTTTCACTTGATGCCTTCTCGGTGAAGGCTGAGAAAAAAAGACAGAGAGAAAGAATGGCAGAGATTGAAAAGGTGAAGAAAAGAAGGGAGGAAAGGGCTCTTGAAAAAGCACAACATGAGGAAGAAATGGCATTGCTAGCTCGAGAGCGTGCTCGTGCTGAATTTCAGGACTGGGAGAAAAAGGAAGAAGAGTTTCATTTTGATCAAAGCAAAATCAGATCAGAGATAAGAGTTCGTGATGGGCGTTCGAAGCCTATAGATATTCTGTCCAAGCAGCTGAATGGGTCAGATGATTTTGATATAGTAATTAATGAGCCATACACTGTATTCAAGGGCTTGACTGTGAAAGAGATGGAGGAGCTTCGTGATGACATCAAAATGCATCTTGATCTGGACAGGGCGACACCTACACATATCGAGTATTGGGAGGCTCTTCTCGTGGTTTGTGATTGGGAACTAGCCGAAGCTCGAAAGAAGGATGCTCTGGATAGAGCCAGAGTTCGTGGTGAGGAGCCTCCTGCTGAGTTGCTTGCAGAAGAAAGGGGTCTGCATTCTAGCATTGAAACAGATGTCAAAAATCTGCTGGAAGGAAAGACTTATGGTGAATTGGAGGCATTACAATCTCAAATTGAGTCACAGATGCGATCTGGAACAGCAAAGGTGGTTGAGTACTGGGAGGCTGTCCTAAAGCGCCTTCATATATACAAGGCCAAGGCTTGCTTGAAGGAAATTCATACGAAAAAACTGCATGAGCATCTTGTACGTCTTGAGCAACCTTTCGAGGATGATGAAGAACAGATAGAGCAGGAAATCAAGATGGAAACTGATCATTCTTTACAAGTGAAAGCTGATGATGATGAGCATGATATTGAAGAACCCCAAACATATTCGCCTGATCTCCTCGAGGAAGAAGATAATCAAGAGGCAGGTTCATTTTCACCAGAACTTATGCATGGTGATGAAGATGAAGAGGCTGTTGATCCTGAGGAGGATAGGGCCATACTGGAACGTAAGCGTGTTGCTGTCTTAGAAGAACAGCAGAGACGGATCCAAGAAGCAATGGCAACAAAACCTGCTCCAGTAGAGGATAATTTTGAACTGAAAGCCTCAAAAGCCATGGGAGTCATGGAGGAAGGCGATGCAGTTTTTGGATCTGGTGCTGAAGTGAACCTAGATTCACAGGTTTATTGGTGGCATGATAAATATCGTCCGAGAAAACCAAAATACTTCAATCGGGTTCATACGGGATATGAGTGGAACAAGTACAACCAGACTCACTATGATCATGACAATCCACCTCCAAAGATTGTGCAAGGATATAAGTTTAACATCTTCTATCCAGACCTTGTTGACAAGACAAAAGCTCCAACTTACACCATTGAGAAGGATGGAAACAGCAGCGAGACATGTATCATAAGGTTCCATGCAGGGCCACCATATGAGGATATTGCATTCCGAATTGTAAACAAAGAATGGGAATACTCTCATAAGAAGGGGTTCAAGTGCACATTTGAGCGTGGAATTTTGCACGTATACTTCAACTTTAAACGATATCGTTATCGCAGGTAA 2049 44.31 MGTHGRSSERKREKKSSSRRRSRRRSDDSESDSDDSDSCDSSPVASSRKRRERRDGSRSSHRSKRRSSSRGRDSGDDSSNDSYDSDDGGRKKIKSSRKVTEEEISEYLAKKAQKKALRVAKKLKSQTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVSLDAFSVKAEKKRQRERMAEIEKVKKRREERALEKAQHEEEMALLARERARAEFQDWEKKEEEFHFDQSKIRSEIRVRDGRSKPIDILSKQLNGSDDFDIVINEPYTVFKGLTVKEMEELRDDIKMHLDLDRATPTHIEYWEALLVVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSIETDVKNLLEGKTYGELEALQSQIESQMRSGTAKVVEYWEAVLKRLHIYKAKACLKEIHTKKLHEHLVRLEQPFEDDEEQIEQEIKMETDHSLQVKADDDEHDIEEPQTYSPDLLEEEDNQEAGSFSPELMHGDEDEEAVDPEEDRAILERKRVAVLEEQQRRIQEAMATKPAPVEDNFELKASKAMGVMEEGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGNSSETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33572209 33577176 - CmPI595203_10g026800.1 Cmu10g2680 428210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2680 682 Pfam Conserved mid region of cactin 208 405 IPR018816 -
Cmu10g2680 682 Coils Coil 172 216 - -
Cmu10g2680 682 SMART CactinC_cactus_3 558 682 - -
Cmu10g2680 682 MobiDBLite consensus disorder prediction 1 102 - -
Cmu10g2680 682 MobiDBLite consensus disorder prediction 434 455 - -
Cmu10g2680 682 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 49 682 - GO:0005681(PANTHER)|GO:0005737(PANTHER)|GO:0045292(PANTHER)
Cmu10g2680 682 MobiDBLite consensus disorder prediction 54 68 - -
Cmu10g2680 682 MobiDBLite consensus disorder prediction 69 102 - -
Cmu10g2680 682 MobiDBLite consensus disorder prediction 434 491 - -
Cmu10g2680 682 Pfam Cactus-binding C-terminus of cactin protein 558 682 IPR019134 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2680 K25058 - - csv:101205416 1159.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1084 . . . . Bpe04g01556 . Bma04g01609 . Cmo06g00421 . . . . . . . Cpe08g01062 . . . . . . . . . . . . . . . . . Cone19ag1214 . . . Cme04g02456 . Blo09g00526 Bda03g01695 Bda05g01199 . . . . Sed02g0587 . . Cma06g00426 . Car06g00366 . . . Bhi11g02013 Tan08g1804 Cmetu04g1992 . . . . Cla10g01862 Cam10g1919 Cec10g1974 Cco10g1946 Clacu10g1936 Cmu10g2680 Cre10g2068 Lsi03g01957 Csa03g03353 Chy04g01988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010441 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32