Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2682 ATGGCAGATCCCGCGTCAGACTCTACCACCAGCAACGCATCGGCCTCTGCCACCGCCACCGCCACCAATGACGCGACTTCTGCCCCACCCGTAGTTACGCCAGTGCCCAAGCGAGCTTGGGGCGATGAAGAAGATGATGATGTGGGTGATGCTGGAGATTCATCCTCTGCACCTACGGAGTACTTGGAATCCCTTAAAATTCAAGACGAAACAACGCTTGAAGAACCCATTGACTCTGACATCACAGCGGTGACAACCGGTGAAACTCCGTATACATCAGCTAGTACTTTTGAGGATCTGAATCTGTCTAAAGAGTTGTTGAAGGGTTTGTATGTTGAGATGAGATTCCATAAGCCAAGTAAAATTCAAGCTATAAGTTTACCTATGATCTTGACTCCTCCTTACAAAGACTTAATTGCTCAAGCACACAACGGTTCTGGAAAGACTACCTGTTTTGTGCTTGGGATGTTGAGTCGTGTTGATGTGAACTTGAAGGCTCCTCAGGCGTTTTGCATATGTCCTACAAGGGAGTTAGCCATGCAGAATATTGAGGTTCTTAAGAAAATGGGAAAATACACTGGGATAACTTCAGAATGTGCTATTCCTGCTGACAGTGCTAACTATGTGCCTATGTCAAAGCGACCACCAATAACTGCGCAAGTTGTGATCGGAACTCCTGGCACAATAAAGAAATGGATGACAGCGAGGAAGTTGGGAGTAAGTTGCGTGAAGATTCTCGTTTTTGATGAGGCTGATCATATGCTTAGCGAGGATGGCTTTCAGGATGATTCATTGAGAATCATGAGGGACATTGAGAGAAGTAGCCCTCATTGCCAGGTTCTTCTGTTCTCTGCAACATTTGATGAGAATGTTAAAAAGTTTGTCTCTAGGGTTGTTAAAGACTACAACCAACTTTTTGTGAAGAAGGAAGAACTATCTTTGGAGAGTGTGAAGCAATTCAAGTTGATATGTCCAGATGAATTAACTAAAATTCGGGTCATAAAAGATAGAATTTTCGAACTTGCAGACAAATTGGGTCAGACAATTATATTTGTGCGCACAAGAAACAGTGCTGGCATGTTACATAAGGCACTAGTTGATCTTGGTTATGATGTGACTACCATTCAAGGGGCAATGACCAATGAAATTAGAGACAAAATAATAAAAGAGTTCAAGGACGGTTTGACCAAAGTTCTTATTTCGACTGACCTTCTAGCTCGAGGCTTTGATCAGCAACAGGTCAACCTAGTTATCAATTATGATCTTCCTCTTAAATATGAATCTTCTTCACAAACGACAAAATACAGATTTTCCTCATCGGCTGATCCTAACTATGAGGTGTACCTTCATAGAATTGGTCGAGCAGGTCGTTTTGGGCGCAAGGGAGCTGTGTTTAACTTGCTGTGTGGTGAAGAGGAAATTATGCGAATGGACAAAATTCAGAAGCATTTTGGGTCTGAAATAATTGAGGTTCGAGACTCCGACGAGGACATTCAAGCAGCCTTAAAAACTGCCGGATTGGTTTGA 1527 42.89 MADPASDSTTSNASASATATATNDATSAPPVVTPVPKRAWGDEEDDDVGDAGDSSSAPTEYLESLKIQDETTLEEPIDSDITAVTTGETPYTSASTFEDLNLSKELLKGLYVEMRFHKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDVNLKAPQAFCICPTRELAMQNIEVLKKMGKYTGITSECAIPADSANYVPMSKRPPITAQVVIGTPGTIKKWMTARKLGVSCVKILVFDEADHMLSEDGFQDDSLRIMRDIERSSPHCQVLLFSATFDENVKKFVSRVVKDYNQLFVKKEELSLESVKQFKLICPDELTKIRVIKDRIFELADKLGQTIIFVRTRNSAGMLHKALVDLGYDVTTIQGAMTNEIRDKIIKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPLKYESSSQTTKYRFSSSADPNYEVYLHRIGRAGRFGRKGAVFNLLCGEEEIMRMDKIQKHFGSEIIEVRDSDEDIQAALKTAGLV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33597906 33600672 + CmPI595203_10g026820.1 Cmu10g2682 428212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2682 508 CDD SF2_C_DEAD 317 468 - -
Cmu10g2682 508 Gene3D - 78 311 IPR027417 -
Cmu10g2682 508 SMART helicmild6 359 459 IPR001650 -
Cmu10g2682 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 499 IPR001650 -
Cmu10g2682 508 Gene3D - 312 499 IPR027417 -
Cmu10g2682 508 MobiDBLite consensus disorder prediction 1 29 - -
Cmu10g2682 508 Pfam DEAD/DEAH box helicase 121 294 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu10g2682 508 SMART ultradead3 115 320 IPR014001 -
Cmu10g2682 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 479 IPR027417 -
Cmu10g2682 508 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 88 484 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0005634(PANTHER)|GO:0010494(PANTHER)|GO:0016973(PANTHER)
Cmu10g2682 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 129 305 IPR014001 -
Cmu10g2682 508 Pfam Helicase conserved C-terminal domain 333 459 IPR001650 -
Cmu10g2682 508 CDD DEADc_DDX19_DDX25 102 305 - -
Cmu10g2682 508 MobiDBLite consensus disorder prediction 65 84 - -
Cmu10g2682 508 MobiDBLite consensus disorder prediction 1 60 - -
Cmu10g2682 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 95 124 IPR014014 GO:0003724(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0789 Cmu-Chr1:8975500 Cmu10g2682 Cmu-Chr10:33597906 6.90E-215 dispersed
Cmu10g2682 Cmu-Chr10:33597906 Cmu09g0076 Cmu-Chr9:936001 1.10E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2682 K18655 - csv:101222195 877.47