Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2684 ATGGCGACCCGCCTTCCGAGGACGAAGCCATTCTGGTCCCTAACTTCCAGATTATCGCCCGACGACAACTCTCCGTTTGCCGCTCTCATCGGATCTAGGCGAAGGTGGTCGTCGTCGTCGTCGTCTTCGTCTTCGTCTTCGTCTTCGTGTTCCTCGCCGAGTAAATCACAGAAAACGGAGAAAAAGTTAATGGACCGTCTTTCATCGGTGATAGACGCCGTCAATGACCGTAAACTCCCTCCTGAGCTTCGAGGCCAGCGTAACTCTGTCAGGTCAGAAACTGATCTGATGAATGTTGTTGAGCGGAGGATTTGGAATTCCATGGAAGAAGGGAAATTCGAGAACTTACCAGGAAAGGGGAAACCTCTGAACCTGTCTACTAATCCTCATGCTGATCCAGCAGAAGACACATTGTACCGGATCTTGTCCAAGAATGGATGTGCACCTGAATGGGTTGAACTCAACAAAGAGATCAGGAGTAACATATCTGTATGGAGATCTTCGTTGAAGAAAGCATTTGAAAGTAGAGGCAATGGAGATAATTCAAAGTGGACTGAGAGTTCAGAGGCTTTGCAAGCTCAATTGCAACACATCAATGACAAGGTTTTTCGATATAACTTAATTGTTCCTTTCGGGCGGCAAATGTTTGGATTGAAATGGGAGAAAGAGATGGATCGTCTCGTAGAATAA 690 46.52 MATRLPRTKPFWSLTSRLSPDDNSPFAALIGSRRRWSSSSSSSSSSSSSCSSPSKSQKTEKKLMDRLSSVIDAVNDRKLPPELRGQRNSVRSETDLMNVVERRIWNSMEEGKFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRSNISVWRSSLKKAFESRGNGDNSKWTESSEALQAQLQHINDKVFRYNLIVPFGRQMFGLKWEKEMDRLVE 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33604788 33606523 + CmPI595203_10g026840.1 Cmu10g2684 428214

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2684 229 Pfam DnaJ homologue, subfamily C, member 28, conserved domain 99 164 IPR018961 -
Cmu10g2684 229 MobiDBLite consensus disorder prediction 33 57 - -
Cmu10g2684 229 MobiDBLite consensus disorder prediction 1 62 - -
Cmu10g2684 229 PANTHER OS08G0560600 PROTEIN 3 229 IPR052573 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2684 K19373 - - csv:101220350 385.956
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1092 . . . . . Bpe03g01265 . Bma10g00061 Cmo06g00419 . . . . . . . Cpe08g01064 . . . . . . . . . . . . . . . . . Cone19ag1216 . . . Cme04g02461 Blo07g01374 . . Bda05g01203 . . . . Sed02g0591 . . Cma06g00423 . Car06g00364 . . . Bhi11g02021 Tan08g1812 Cmetu04g3159 Lac10g2943 . . . Cla10g01866 Cam10g1923 Cec10g1978 Cco10g1950 Clacu10g1940 Cmu10g2684 Cre10g2072 Lsi03g01962 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009467 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 2 1 31