Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2714 ATGCCGTTTCAGAGGATAGTTATCGCCGTCGGCCGGCCGGAGGAGGCCACCCACCCCGCCGCCCTGAAGGCCGCCTTGGCCGAGTTCATTTCCACTCTTATCTTCGTTTTCGCCGGCCAAGGTTCCGGTCTGGCTTTCTCTAAGCTCACCCATAATTCTCCCACCAGCCCTACCGGCCTAATGAGCGCTTCCTTAGCTCATGGCTTTGCCCTTTTCGTCGGTGTCTCCACCGCCGCCAACATCTCCGGCGGCCACCTCAACCCTGCCGTCACTTTCGGGGCCTTGGTCGGCGGTAACATCACTATCCTCCGCGGGATTCTTTACTGGATCGCCCAGCTCCTCGGCGCTGTCGTCGCTAACTTGTTGCTCAAGTTCGTCATCGTCGACGTGGCTATTACGGGATTCTTGCCTACAGCAGGAGTGGGAGTATGGGAAGCATTTGTATTCGAGATCGCAATGACATTCGGATTAGTCTACACAGTATACGCCACCGCCATTGATCCCAAGAGAGGTGAGTTGGGAGTAATAGCACCCATTGCCATCGGTTTAATTGTGGCGGCCAACATTCTGGTGGGTGGCCCATTCACGGGAGCCTCCATGAACCCAGCAGTGGCCTTCGGACCTGCCCTGGTGTCTTGGTCTTGGGGTGACCATTGGATCTACTGGGCTGGCCCACTCATCGGCGGCGGCTTAGCCGGCATTGTGTATGAGCTCTTCTTCATTGGATTCACCCACCAGCCCTTGCCCGCTGCAGAGTACTGA 762 57.35 MPFQRIVIAVGRPEEATHPAALKAALAEFISTLIFVFAGQGSGLAFSKLTHNSPTSPTGLMSASLAHGFALFVGVSTAANISGGHLNPAVTFGALVGGNITILRGILYWIAQLLGAVVANLLLKFVIVDVAITGFLPTAGVGVWEAFVFEIAMTFGLVYTVYATAIDPKRGELGVIAPIAIGLIVAANILVGGPFTGASMNPAVAFGPALVSWSWGDHWIYWAGPLIGGGLAGIVYELFFIGFTHQPLPAAEY 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33837136 33839127 + CmPI595203_10g027140.1 Cmu10g2714 428244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2714 253 CDD MIP 23 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 149 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 67 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 104 123 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PRINTS Major intrinsic protein family signature 23 42 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 PANTHER AQUAPORIN-8 5 245 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cmu10g2714 253 Gene3D Glycerol uptake facilitator protein. 6 248 IPR023271 -
Cmu10g2714 253 SUPERFAMILY Aquaporin-like 15 248 IPR023271 -
Cmu10g2714 253 FunFam Probable aquaporin TIP1-1 6 253 - -
Cmu10g2714 253 NCBIfam MIP family channel protein 27 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2714 253 ProSitePatterns MIP family signature. 85 93 IPR022357 -
Cmu10g2714 253 Pfam Major intrinsic protein 16 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1433 Cmu-Chr1:27852513 Cmu10g2714 Cmu-Chr10:33837136 5.80E-74 dispersed
Cmu09g0176 Cmu-Chr9:1930694 Cmu10g2714 Cmu-Chr10:33837136 1.50E-70 dispersed
Cmu09g1928 Cmu-Chr9:35370220 Cmu10g2714 Cmu-Chr10:33837136 1.90E-84 dispersed
Cmu10g2714 Cmu-Chr10:33837136 Cmu10g2754 Cmu-Chr10:34169189 4.70E-27 dispersed
Cmu10g2714 Cmu-Chr10:33837136 Cmu04g0978 Cmu-Chr4:24221808 1.10E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2714 K09873 - csv:101222386 457.603