Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2729 ATGGCGATCACGCTGCGCAAATCTTTCAATTCCCAATCGCAGATTTACACTTCCCGTCGTCCTCCAATCCACTTTCCGACCGACCCCACAATCTCCATTCCCTCATTCCTCTTTCGAAACTCCTCCTCTTTCCCTAACGCCCTCGCCCTCGCCGACTCCGACTCCGGCGAATCCTTAACTTTCCGTCAGCTTCAAATACAAGTCTCCAAGCTCGCCCATGTCTTCATCCAACTCGGGATTCGAAAAAGCGATGTGGTTCTCATATTCGCCCCTAATTCCATTCACTTCCCTGTTTGTTTCTTCGCCATTGTCGCCATTGGAGCCATCGCCACCACTTGTAATCCTGCTTACACTTTTGGGGAACTGTCAAAGCAAGTCGCTAACTGCAACCCCAAGCTCGTAATCACCGTTCCCGAACTCTGGGACACAATCGGTAAACTCAACTTGCCTTCTATAATTCTGGGATCTAAAATTTCTTCAAAATTTTCCCGTCCCAACATCTGGGGTTACTCCGATTTGATTAAAAAAGCCGGCGATGTGTCCAATTTGCCGGTGAGTGAAGTGGGTCAGAACGATGTAGCGGCGCTTTTATATTCATCTGGGACGACTGGGATTAGTAAGGGAGTGATTCTAACTCACAGGAACTTCATAACTACCTCTTTAATGGTGACCCAAGATCAGGATCTTCTTGGTGATCCTAGAAACGTGTTTTTATGCTTTCTTCCAATGTTCCATGTGTTTGGTCTCTCTATAATTGTTTACTCGCAGCTTCAAAGAGGAAACACTGTCGTTTCAATGGCGAAGTTTGAGCTAGAAAAGGCTTTGGGGGTGGTGATGAAGTACAGGATCACTCATCTTTATGTTGTTCCACCTGTAATTATAGCTCTCACAAAGCAAAGTGTAGTGAAGAACTACGACTTGTCGTCGTTGAAGCAGATTTTATCTGGGGCAGCGCCTCTTGGGAAGGATGTGATGGAAGAATGCTCCAAGTTTATACCTCAGGCCAGGATCATCCAGGGATATGGCATGACAGAAACTTGTGGAGTTATTTCAGTGGGGAATGTGGGAGTAGAATCTACGCTATCTGGGGCAACTGGATCCCTTGTTTCAGGAGTTGAAGCGCAAGTTTTGAGTACAGAAACACAGAAACGTCTTCCACCCGGTGAAACAGGGGAAATTTGTGTGCGAGGACCAAATATGATGAAAGGATATTTCAACAATCAGGAAGCCACCAGCAAAACCATAGACGATCAGGGATGGGTACATACTGGAGATATAGGGTATTTCAATGAAGAAGGAGAATTGTTTGTTGTGGACAGAATCAAAGAACTTATCAAGTGTTATGGTTTTCAGGTTGCACCGGCAGAGCTTGAAGCATTGCTACTTTCTCACCCTCAAATAACAGATGCCATTGTGATCCCATATCCTGATGATAAAGCTGGTGAGGTCCCTATCGCATTTGTTGTTCGTTCACCCCATAGCTCGATAAAGGAAGAAGATGTTAAAAATTTTATTGCTGGGCAGGTTGCACCATATAAGAGATTAAAAAGAGTAACCTTCACAAGTAGTGTTCCGAAGTCGGTTTCGGGAAAACTTCTAAGAAGGGAGGTCATAGCACAAGTCCGTGCCAAGATGGGAGAGTTGGCCGAGACGGGCACTAAATACTTTTCAAGAGATCTCCTCCGAATCACTAGTATGGCTATCGAAATCATGAGCATCAGCTTGAAGGTTCCAGATCCAAGTGATCGTTTAATAAGGTCACCGGTCGCAACAATCCAATGA 1782 45.17 MAITLRKSFNSQSQIYTSRRPPIHFPTDPTISIPSFLFRNSSSFPNALALADSDSGESLTFRQLQIQVSKLAHVFIQLGIRKSDVVLIFAPNSIHFPVCFFAIVAIGAIATTCNPAYTFGELSKQVANCNPKLVITVPELWDTIGKLNLPSIILGSKISSKFSRPNIWGYSDLIKKAGDVSNLPVSEVGQNDVAALLYSSGTTGISKGVILTHRNFITTSLMVTQDQDLLGDPRNVFLCFLPMFHVFGLSIIVYSQLQRGNTVVSMAKFELEKALGVVMKYRITHLYVVPPVIIALTKQSVVKNYDLSSLKQILSGAAPLGKDVMEECSKFIPQARIIQGYGMTETCGVISVGNVGVESTLSGATGSLVSGVEAQVLSTETQKRLPPGETGEICVRGPNMMKGYFNNQEATSKTIDDQGWVHTGDIGYFNEEGELFVVDRIKELIKCYGFQVAPAELEALLLSHPQITDAIVIPYPDDKAGEVPIAFVVRSPHSSIKEEDVKNFIAGQVAPYKRLKRVTFTSSVPKSVSGKLLRREVIAQVRAKMGELAETGTKYFSRDLLRITSMAIEIMSISLKVPDPSDRLIRSPVATIQ 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 33970409 33975835 + CmPI595203_10g027290.1 Cmu10g2729 428259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2729 593 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - GO:0016405(PANTHER)
Cmu10g2729 593 Gene3D - 13 442 IPR042099 -
Cmu10g2729 593 SUPERFAMILY Acetyl-CoA synthetase-like 17 549 - -
Cmu10g2729 593 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Cmu10g2729 593 Gene3D - 443 546 IPR045851 -
Cmu10g2729 593 FunFam 4-coumarate--CoA ligase 2 443 544 - -
Cmu10g2729 593 Pfam AMP-binding enzyme 39 405 IPR000873 -
Cmu10g2729 593 CDD 4CL 25 536 - -
Cmu10g2729 593 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cmu10g2729 593 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0185 Cmu-Chr1:1836029 Cmu10g2729 Cmu-Chr10:33970409 9.90E-24 dispersed
Cmu03g0895 Cmu-Chr3:3500142 Cmu10g2729 Cmu-Chr10:33970409 5.30E-193 dispersed
Cmu07g0270 Cmu-Chr7:2648584 Cmu10g2729 Cmu-Chr10:33970409 4.70E-107 dispersed
Cmu10g2729 Cmu-Chr10:33970409 Cmu11g1368 Cmu-Chr11:25831942 2.30E-101 dispersed
Cmu10g2729 Cmu-Chr10:33970409 Cmu06g1391 Cmu-Chr6:25068067 8.10E-102 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2729 K01904 - csv:101204417 992.26