Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu10g2730 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGGCTTGAGCTCGTCTCTTCTGATCCTCTTCCTCCCGAGCCATTTATGACCAACAACCCATCAGCTCCAACAGCGAAAAACACAGACCCTGAAGACCTCAGACCCACAGGAGAGGCTGAAGACGGAACTGGCAGAGCCACAAACAGAGAAATGGAGTCTACGAGTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAGCCTGAGGCCGTCACTGCCGTTGGGTTTGGAGAGCTTTTCAGATTCGCCGATGGGTTGGATTACGTTTTGATGGCAATCGGGTCGGTCGGAGCTCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTTCGATTCTTCGCTGATCTTGTCAACTCTTTTGGGTCTTATGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTCTACTTTCTCGTGGTTGGAGCTGCGATATGGGCGTCATCATGGGCAGAGATTTCGTGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCAGCACTGGACCAGGACATTCAGTATTTTGATACAGAGGTTCGAACATCTGACGTCGTTTTCGCCATCAACACTGATGCAGTGATGGTTCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACTTTTGTGTCCGGCTTCGTCGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCTGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGACCCAGGAAGCTCTTTCAGAAGCTGGGAATATAGTCGAACAGACAATAGTTCAAATTCGAGTGGTTTTCGCATTCGTGGGCGAATCAAGAGCATTACAGAGATACTCCGCCGCATTGAAGATTTCTCAAAAGATAGGTTACAAGAGTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGTGGTTATCTTGTCAGACACCACGCCACCAATGGCGGTCTGGCCATTGCCACTATGTTTGCAGTGATGATTGGCGGACTGGCATTGGGGCAATCTGCTCCGAGCATGAGTTCATTCGCTAAGGCTAAAGTTGCAGCTGCCAAAATCTACCGTATAATCGACCATAAGCCTACTCTAAACCGCAACAACGAATCTGGTTTGGAATTAGAATCAGTTTCAGGACTGGTTGAACTGAAGAATGTAGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAATTTCTCCCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCTGGCAAGAGCACCGTCGTCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGAGAAGTTCTACTAGATGGGCACGACATAAAAACTTTGAAGCTGAGATGGTTAAGGCAGCAGATAGGATTGGTGAGCCAAGAACCTGCTCTTTTTGCTACCACCATCAAGGAGAATATTCTCTTGGGCAGACCTGATGCAGACCAACTTGAGGTGGAGGAAGCTGCCCGAGTCGCCAATGCTCATTCATTCATTATCAAACTTCCTGAAGGCTATGACACCCAGGTAGGGGAAAGAGGACTGCAGCTTTCTGGAGGGCAGAAGCAGAGGATTGCAATAGCAAGGGCAATGCTTAAAAACCCTGCGATCCTACTCTTAGATGAAGCTACTAGTGCATTGGACTCTGAGTCGGAAAAGCTTGTACAGGAAGCTCTTGATCGTTTTATGATTGGGCGAACCACTCTTGTTATTGCCCATCGACTCTCTACCATTCGCAAGGCTGACCTTGTGGCTGTACTCCAACAAGGAAGTGTTTCTGAAATTGGAACACATGATGAGCTCTTTGCTAAAGGAGAGAATGGTGTATACGCCAAGCTCATCCGGATGCAGGAGATGGCACATGAAACCGCTCTCAATAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGGAACTCAGTGAGCTCACCAATCATTGCACGAAATTCTTCCTATGGACGATCACCGTATTCACGTCGGTTGTCTGACTTCTCCACATCTGATTTTAGTCTTTCCCTTGATGCCTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTCAAGGAGCAAGCCAGTTCCTTTTGGCGTCTCGTGAAAATGAATTCACCTGAATGGCTTTATGCATTACTTGGTTCTATTGGCTCTGTTGTTTGTGGGTTTTTAAGTGCCTTCTTTGCATACGTTCTAAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGGTTTCATGAGCAGAGAAATTATTAAGTACTGCTACCTATTAATCGGACTATCATCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTAAGAGAGAAGATGCTGACAGCAGTACTGAAAAATGAAATGGCATGGTTTGATCAGGAAGAAAATGAGAGTGCAAAGATTGCTGCAAGGCTGGCCCTCGATGCTAACAATGTCAGATCAGCCATTGGAGACAGGATTTCTGTGATTGTACAGAACACATCACTCATGCTGGTCGCATGCACCGCTGGGTTCGTTTTGCAGTGGCGCCTATCTCTTGTCCTTGTAGCTGTCTTCCCTGTGGTTGTTGCGGCCACAGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCCAACCATGCCAAGGCCACACAACTAGCAGGGGAGGCAATAGCCAATGTAAGGACAGTTGCTGCATTCAACTCGGAGGAGAAGATTGTCAGACTATTTTCGACCAACCTCGAGATCCCACTACGTCGCTGCTTTTGGAAGGGACAGATTGCTGGTAGTGGATTTGGTGTTGCTCAGTTTTCTCTTTATGCTTCCTATGCTCTTGGTCTTTGGTATGCCTCATGGCTTGTAAAGCACGGGCTCTCTGATTTTTCAAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCCAATGGTGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGTTCAGTCTTTGCACTTCTTGATCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACCCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAACTTAAACATGTTGACTTTTCCTACCCAACTCGTCCTGATATCCCTGTCTTTAGAGACCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCTAGCGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAACCAACATCGGGACGAGTTATGATTGATGGAAAGGATATTCGTAAGTTCAATCTCAAGTCCTTGAGAAAGCACATTGCAATGGTCCCTCAGGAGCCATGCTTATTTGCTGCTTCCATATATGATAATATAGCCTATGGCCATGAATCAGCCACCGAAGCCGAGATCATTGAAGCCGCCACTTTGGCAAATGCCCATAAGTTCATATCTGGGTTGCCAGAAGGATATAAAACTTTTGTTGGGGAGAGAGGAGTTCAACTATCGGGTGGACAGAAACAAAGGATTGCAATTGCCCGTGCGCTGATCAGGAAGGCTGAGCTTATGCTACTAGATGAGGCAACGAGTGCACTCGATGCTGAGTCTGAGCGATCGGTCCAAGAGGCGCTCGACCGAGCTTGTTCGGGAAAAACTACAATTGTAGTTGCTCATCGACTATCAACTATCAGGAATGCTCATGTCATTGCAGTAATTGATGATGGTAAAGTTTCAGAACAGGGATCACACTCACATTTGTTGAAAAATTACCCCGATGGGTGTTACGCCAGGATGATACAATTACAAAGATTCACACACAGCCAAGTCATTGGTATGACTTCAGGTTCAACTTCCTCAGCAAGAACTAGGGAGGATGAGGAGAGAGAGAGCTAG | 4080 | 46.91 | MSQDSEEIKTIEQWKWSEMQGLELVSSDPLPPEPFMTNNPSAPTAKNTDPEDLRPTGEAEDGTGRATNREMESTSDSKKENGGGTSGEKPEAVTAVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKTQEALSEAGNIVEQTIVQIRVVFAFVGESRALQRYSAALKISQKIGYKSGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKAKVAAAKIYRIIDHKPTLNRNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPISGEVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIKENILLGRPDADQLEVEEAARVANAHSFIIKLPEGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGVYAKLIRMQEMAHETALNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSIGSVVCGFLSAFFAYVLSAVLSVYYNPDHGFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVELKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRKFNLKSLRKHIAMVPQEPCLFAASIYDNIAYGHESATEAEIIEAATLANAHKFISGLPEGYKTFVGERGVQLSGGQKQRIAIARALIRKAELMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVSEQGSHSHLLKNYPDGCYARMIQLQRFTHSQVIGMTSGSTSSARTREDEERES | 1359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 33994906 | 34000856 | + | CmPI595203_10g027300.1 | Cmu10g2730 | 428260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu10g2730 | 1359 | Gene3D | - | 1081 | 1332 | IPR027417 | - | |
| Cmu10g2730 | 1359 | Gene3D | - | 427 | 677 | IPR027417 | - | |
| Cmu10g2730 | 1359 | Pfam | ABC transporter | 1111 | 1259 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 100 | 689 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cmu10g2730 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 437 | 673 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1092 | 1328 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 759 | 1074 | - | - | |
| Cmu10g2730 | 1359 | MobiDBLite | consensus disorder prediction | 51 | 85 | - | - | |
| Cmu10g2730 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 415 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cmu10g2730 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 437 | 676 | - | - | |
| Cmu10g2730 | 1359 | ProSitePatterns | ABC transporters family signature. | 576 | 590 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | PANTHER | ABC TRANSPORTER B FAMILY | 68 | 701 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Cmu10g2730 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 769 | 1056 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cmu10g2730 | 1359 | FunFam | ABC transporter B family member 1 | 1082 | 1332 | - | - | |
| Cmu10g2730 | 1359 | FunFam | ABC transporter B family member 1 | 427 | 677 | - | - | |
| Cmu10g2730 | 1359 | Pfam | ABC transporter transmembrane region | 115 | 386 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cmu10g2730 | 1359 | Pfam | ABC transporter transmembrane region | 771 | 1039 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cmu10g2730 | 1359 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 114 | 402 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Cmu10g2730 | 1359 | MobiDBLite | consensus disorder prediction | 1339 | 1359 | - | - | |
| Cmu10g2730 | 1359 | ProSitePatterns | ABC transporters family signature. | 1231 | 1245 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | FunFam | ABC transporter B family member 1 | 748 | 1057 | - | - | |
| Cmu10g2730 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1083 | 1331 | IPR027417 | - | |
| Cmu10g2730 | 1359 | SMART | AAA_5 | 1119 | 1311 | IPR003593 | GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | SMART | AAA_5 | 464 | 650 | IPR003593 | GO:0016887(InterPro) | |
| Cmu10g2730 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 735 | 932 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cmu10g2730 | 1359 | FunFam | ABC transporter B family member 19 | 1058 | 1080 | - | - | |
| Cmu10g2730 | 1359 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 113 | 400 | - | - | |
| Cmu10g2730 | 1359 | FunFam | ABC transporter B family member 1 | 100 | 435 | - | - | |
| Cmu10g2730 | 1359 | CDD | ABC_MTABC3_MDL1_MDL2 | 1092 | 1331 | - | - | |
| Cmu10g2730 | 1359 | SUPERFAMILY | ABC transporter transmembrane region | 756 | 1078 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cmu10g2730 | 1359 | MobiDBLite | consensus disorder prediction | 1 | 91 | - | - | |
| Cmu10g2730 | 1359 | Gene3D | ABC transporter type 1, transmembrane domain | 991 | 1335 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Cmu10g2730 | 1359 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 428 | 676 | IPR027417 | - | |
| Cmu10g2730 | 1359 | Pfam | ABC transporter | 455 | 604 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu09g1784 | Cmu-Chr9:34040535 | Cmu10g2730 | Cmu-Chr10:33994906 | 9.70E-299 | dispersed | |
| Cmu09g1930 | Cmu-Chr9:35379291 | Cmu10g2730 | Cmu-Chr10:33994906 | 1.80E-277 | dispersed | |
| Cmu10g2730 | Cmu-Chr10:33994906 | Cmu10g2532 | Cmu-Chr10:32047573 | 2.90E-14 | dispersed | |
| Cmu01g2360 | Cmu-Chr1:35684424 | Cmu10g2730 | Cmu-Chr10:33994906 | 1.50E-291 | transposed | |
| Cmu02g0035 | Cmu-Chr2:417089 | Cmu10g2730 | Cmu-Chr10:33994906 | 8.10E-17 | transposed | |
| Cmu04g1206 | Cmu-Chr4:26611340 | Cmu10g2730 | Cmu-Chr10:33994906 | 3.70E-89 | transposed | |
| Cmu05g1599 | Cmu-Chr5:25669594 | Cmu10g2730 | Cmu-Chr10:33994906 | 0.00E+00 | transposed | |
| Cmu09g1121 | Cmu-Chr9:11670637 | Cmu10g2730 | Cmu-Chr10:33994906 | 0.00E+00 | transposed | |
| Cmu09g1757 | Cmu-Chr9:33620856 | Cmu10g2730 | Cmu-Chr10:33994906 | 0.00E+00 | transposed | |
| Cmu10g2617 | Cmu-Chr10:32935590 | Cmu10g2730 | Cmu-Chr10:33994906 | 1.10E-55 | transposed | |
| Cmu11g1100 | Cmu-Chr11:20402983 | Cmu10g2730 | Cmu-Chr10:33994906 | 1.30E-282 | transposed | |
| Cmu11g1334 | Cmu-Chr11:25566718 | Cmu10g2730 | Cmu-Chr10:33994906 | 2.60E-294 | transposed | |
| Cmu10g2730 | Cmu-Chr10:33994906 | Cmu02g2137 | Cmu-Chr2:34995450 | 1.20E-07 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu10g2730 | K05658 | - | csv:101220974 | 2457.94 |