Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2754 ATGGCGAACAACGACATCGAAATCGGAGGTCGGGGAGCGGCGTCGAGGAAGGACTATTTGGACCCGCTTCCGGCGCCCATGATCGACATGGAGGAGTTTACGAAATGGTCGTTTTACAGAGCTATCATTGCTGAATTTGTGGCGACTCTGTTGTTTCTATACGTCGCCGTTTTGACGGTGATCGGAAATAAAAGCCAGATGGACCCGCTGAACGGCGGGAATGTCTGCGGCGGAGTTGGCCCGGTCGGAATCTCGTGGGTCTTCGGCGGAATGATCTTCGTCCTCGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCAGCAGTGACATTCGGAATGTTTATGGCAAGAAAGATATCGCTGGTCCGCGCCTTGCTCTACATCATAGCTCAGTGCTTGGGGGCGCTGTGCGGCTGCGCCTTGGTCAAGACACTCCAAAGGGATCGCTACAACCACTACGGCGGTGGCGCGAACCAGCTTGTCGATGGTTACAGCCGAGGCACCGGCCTTGCCGTCGAGATTATGGGCACCTTTGTTCTTCTCTACACCGTCTTCTCCGCCACTGATCCTAAACGTAATGCCAGAGACTCCCATGTTCCCGTCTTGGCACCACTCCCCATTGGCTTCGCTGTCTTCATGGTTCACCTCGCTACGATTCCCGTCACCGGCACTGGCATCAACCCGGCTCGAAGCTTCGGTGCCGCCGTCATCATCAATGATCGGAAAGTTTGGAAAGATCATTGGATTTTTTGGGTTGGGCCGCTGATCGGAGCAACCATTGCTGCAATGTATTATCAATATGTTCTTCGAGCCTCCGCCGTGAAAGCAATCGGATCTTTCAGAAGCTCGCCGCCAACTCGCTATTAA 873 54.07 MANNDIEIGGRGAASRKDYLDPLPAPMIDMEEFTKWSFYRAIIAEFVATLLFLYVAVLTVIGNKSQMDPLNGGNVCGGVGPVGISWVFGGMIFVLVYCTAGISGGHINPAVTFGMFMARKISLVRALLYIIAQCLGALCGCALVKTLQRDRYNHYGGGANQLVDGYSRGTGLAVEIMGTFVLLYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIINDRKVWKDHWIFWVGPLIGATIAAMYYQYVLRASAVKAIGSFRSSPPTRY 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34169189 34172426 + CmPI595203_10g027540.1 Cmu10g2754 428284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2754 290 CDD MIP 40 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Cmu10g2754 290 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 284 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Cmu10g2754 290 FunFam Probable aquaporin PIP1-2 25 286 - -
Cmu10g2754 290 NCBIfam MIP family channel protein 44 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2754 290 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0934 Cmu-Chr4:23793699 Cmu10g2754 Cmu-Chr10:34169189 1.60E-113 dispersed
Cmu10g2714 Cmu-Chr10:33837136 Cmu10g2754 Cmu-Chr10:34169189 4.70E-27 dispersed
Cmu10g2754 Cmu-Chr10:34169189 Cmu10g2899 Cmu-Chr10:35357094 2.30E-94 dispersed
Cmu10g2754 Cmu-Chr10:34169189 Cmu02g2107 Cmu-Chr2:34686464 1.40E-120 wgd
Cmu10g2754 Cmu-Chr10:34169189 Cmu04g0930 Cmu-Chr4:23758466 1.70E-108 wgd
Cmu10g2754 Cmu-Chr10:34169189 Cmu05g2155 Cmu-Chr5:31031396 9.70E-117 wgd
Cmu10g2754 Cmu-Chr10:34169189 Cmu08g0692 Cmu-Chr8:19228752 1.50E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2754 K09872 - csv:101214142 551.977