Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2759 ATGTCAAGTAATCCCTTTTCTCTTCTCTCTTCTACTACCACTGCAGCCTTTGCTCACCAGCACGAGGATGCTAACCCTAACCCTAACCCTAAACCCAAACCCTCCGCTGCCGCAAAGAAGAAGAGAAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTATTGCTTTGTCGCCAAAATCGCTCATGGCAACGAATAGATTCATATGCGAAATTTGTAACAAGGGGTTTCAGAGAGACCAAAATCTGCAACTTCATCGACGAGGGCATAACCTACCATGGAAGTTGCGACAACGGACAAACAAGGAGCCAATCAAGAAGAAGGTGTATATTTGCCCAGAGAAGATGTGCGTACACCACGATCCGTCACGAGCCCTTGGCGACCTCACTGGAATAAAGAAACATTTCAGCCGGAAACACGGTGAGAAGAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGATAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATCACAACAGTTTCAGCGACAAATATTCTCAATAATCTTAGAAATGATTCAAATATTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCATACAAATAATAATCTTCCATCTCTTGGAGATATTTCTGGGCTTTCCCAATTCAGTCATTCAGATCATTTCTTGAGAGATTTTGAAGATCATCAACAGAAGAACAGATCTCCATTATCACTTTGGTTGAACCAAGCTTCAGCTGAAACTGCAATCAACAACAACAACAATAATATTTCCAACTTTTTTGGAGCTTCTTCTTCTTCTTCCAATCTTTTTGGATCGATCACCGAAAACGGGCTTTCGATGTTGCCAGTGATTGAGAAGGAAGATGTTGAGAATAAGGGAAGTAATAATTTGTCGAAAGCTACATCGTCTTCCGCAGCAGCGCTGTTGTCGGGTCAGTCTTCTCAGTCTGTGGTTTCGTCTTCTCCGATGTCGGCGACCGCCCTTCTACAAAAAGCGGCTCTTATGGGCTCAACTAGAAGCAACAATAATAATTCCGTGCTCTTCGGTGCGGGTGCTTTTGGAGTAATGAGTTCTTCGTCGTCATCGTCTTCCAATGCAGTAAGCTTGAACTCTCTTAATAAATCTAGAAGCTTGACAATGGCTGACTCGGTTCAGATGATCGGTACGAACTCCGACTTAAGCTCGAATTGTCTCAGCCAACTTCTAATACCACCCAACGCTAACAACGGTATGAGAAGTAGCGGTCAAACGAGGGACTTCCTCGGAGTCGGAGGAGGAGAAGCACCCCGACCGCCATTCCTTCCGCCGGAGCTAGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCACCAACCACTAA 1482 43.99 MSSNPFSLLSSTTTAAFAHQHEDANPNPNPKPKPSAAAKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKMCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSNILLHQQDQSLIDHHTNNNLPSLGDISGLSQFSHSDHFLRDFEDHQQKNRSPLSLWLNQASAETAINNNNNNISNFFGASSSSSNLFGSITENGLSMLPVIEKEDVENKGSNNLSKATSSSAAALLSGQSSQSVVSSSPMSATALLQKAALMGSTRSNNNNSVLFGAGAFGVMSSSSSSSSNAVSLNSLNKSRSLTMADSVQMIGTNSDLSSNCLSQLLIPPNANNGMRSSGQTRDFLGVGGGEAPRPPFLPPELAKFAAINSTMGLSQFATNH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34202717 34204996 - CmPI595203_10g027590.1 Cmu10g2759 428289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2759 493 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Cmu10g2759 493 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cmu10g2759 493 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 210 - -
Cmu10g2759 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cmu10g2759 493 SMART c2h2final6 145 165 IPR013087 -
Cmu10g2759 493 SMART c2h2final6 68 90 IPR013087 -
Cmu10g2759 493 SMART c2h2final6 110 140 IPR013087 -
Cmu10g2759 493 FunFam protein indeterminate-domain 12-like 47 116 - -
Cmu10g2759 493 MobiDBLite consensus disorder prediction 1 20 - -
Cmu10g2759 493 MobiDBLite consensus disorder prediction 1 52 - -
Cmu10g2759 493 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Cmu10g2759 493 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Cmu10g2759 493 Gene3D Classic Zinc Finger 123 202 - -
Cmu10g2759 493 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
Cmu10g2759 493 Gene3D Classic Zinc Finger 47 121 - -
Cmu10g2759 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 462 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu10g2759 493 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0847 Cmu-Chr3:2887259 Cmu10g2759 Cmu-Chr10:34202717 1.50E-86 dispersed
Cmu09g0066 Cmu-Chr9:880309 Cmu10g2759 Cmu-Chr10:34202717 3.80E-87 dispersed
Cmu09g0705 Cmu-Chr9:6571100 Cmu10g2759 Cmu-Chr10:34202717 6.50E-84 dispersed
Cmu11g0072 Cmu-Chr11:1289319 Cmu10g2759 Cmu-Chr10:34202717 1.30E-84 transposed
Cmu10g2759 Cmu-Chr10:34202717 Cmu04g0924 Cmu-Chr4:23713415 1.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7069 PF12171 zf-C2H2_jaz 7.20E-05 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2759 K25870 - csv:101213422 757.673