Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2778 ATGAGAAAAAGCAACACTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGTAAGATGTTTGATTTTGGGTGGAAAGCCTTACCTTACCTTAAAGTTACCAAGAGTGACCCCATGGGTATGCAATCCAGCACATTTGCTCTATTTCTTCAAGTCTTAAAGAACGATGATAACATCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTCTCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 942 45.75 MRKSNTRLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWLMLRRVPAEEAMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQGKMFDFGWKALPYLKVTKSDPMGMQSSTFALFLQVLKNDDNISGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFLPHKLSYFFIVLLEFRESSVCSAKEG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34378623 34388694 - CmPI595203_10g027780.1 Cmu10g2778 428308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2778 313 Gene3D Histone, subunit A 72 198 IPR009072 GO:0046982(InterPro)
Cmu10g2778 313 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 74 196 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cmu10g2778 313 MobiDBLite consensus disorder prediction 152 172 - -
Cmu10g2778 313 ProSitePatterns NF-YB/HAP3 subunit signature. 96 112 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2778 313 MobiDBLite consensus disorder prediction 152 167 - -
Cmu10g2778 313 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 129 IPR003958 -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 131 149 - -
Cmu10g2778 313 SUPERFAMILY Histone-fold 74 169 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2778 K08065 - - csv:101212699 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1240 Cmu-Chr10:5304306 Cmu10g2778 Cmu-Chr10:34378623 5.00E-36 dispersed
Cmu10g1258 Cmu-Chr10:5472870 Cmu10g2778 Cmu-Chr10:34378623 7.10E-27 dispersed
Cmu10g2778 Cmu-Chr10:34378623 Cmu02g1376 Cmu-Chr2:27393942 1.70E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g1258 . 12 148 CCAAT-HAP3 Transcription Factor Family AT5G47670 69.6 2.0e-48 189.5
Cmu02g0921 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cmu10g1258 . 8 170 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cmu07g0930 . 10 138 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cmu02g0921 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cmu10g1240 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.1 4.4e-50 194.5
Cmu07g0930 . 29 135 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cmu02g1376 . 408 526 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.9 1.8e-43 172.6
Cmu09g0586 . 45 140 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cmu02g1376 . 395 511 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 6.0e-49 190.7
Cmu02g0921 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cmu07g0930 . 16 122 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cmu10g1240 . 1 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.3 3.5e-41 164.9
Cmu09g0586 . 41 136 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.9 2.8e-38 155.2
Cmu09g0586 . 43 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cmu02g0921 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.9e-39 157.5
Cmu10g1240 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.0 5.9e-39 157.5
Cmu07g0930 . 32 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 5.0e-38 154.5
Cmu02g1376 . 401 560 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 3.7e-55 211.5
Cmu10g2778 . 74 206 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.0e-49 191.8
Cmu02g0921 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cmu07g0930 . 31 136 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 4.0e-41 164.9
Cmu10g1240 . 6 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.6 2.6e-40 162.2
Cmu09g0586 . 44 146 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cmu07g0930 . 19 133 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cmu02g0921 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cmu10g1240 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 79.2 8.4e-41 164.1
Cmu02g1376 . 421 515 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cmu09g0586 . 45 145 CCAAT-HAP3 Transcription Factor Family AT2G13570 73.3 4.6e-39 158.3
Cmu02g0921 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cmu10g1240 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.6 2.0e-49 192.6
Cmu07g0930 . 27 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.5e-45 177.2
Cmu02g1376 . 421 531 CCAAT-HAP3 Transcription Factor Family AT5G47640 70.9 1.8e-42 169.5
Cmu09g0586 . 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cmu02g1376 . 406 559 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.4 3.8e-55 211.5
Cmu10g2778 . 74 206 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.6 6.4e-47 184.1
Cmu02g0921 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cmu10g1240 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.5 5.3e-41 164.5
Cmu07g0930 . 20 124 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.9e-41 164.1
Cmu09g0586 . 44 146 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000266 8 6 6 8 9 3 3 3 3 2 3 3 6 4 4 6 3 10 6 3 4 4 4 3 4 3 2 16 9 4 152
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7071 PF00808 CBFD_NFYB_HMF 1.40E-21 CL0012 Cmu TF