Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2778 ATGAGAAAAAGCAACACTCGTCTCCTTTCTCCTATCTTCACCATCGTCCGATTCCATTCCACCACTCCATTTCCACCCGATCTAAATCCTTCTCTCTCGCGCCCAAATTACAAATCTTCCGTTTTCTCCCACCAGGGTTTTGGTGAAGGATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGCCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGATCATGAAGAAGGCTCTTCCTGCTAATGGGAAGATTGCTAAAGATGCTAAAGAAACCGTACAAGAATGTGTATCGGAGTTTATCAGTTTTATTACCAGCGAGGCAAGTGATAAATGTCAAAGAGAGAAACGGAAGACGATTAATGGAGATGATTTACTTTGGGCCATGGCCACTCTTGGATTTGAGGATTATATCGATCCACTTAAAACCTACTTGACGAAATACAGAGAGACGGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGTGATGCGTCAGCTAAGAAAGAAGCTCATTCAACCCCTATTTCTCAGATTGCTCATCAAGGGTCGCTTTCCCAAGGAGTTAATTATGCGAGTTCTCAATCACAAGCCCAGCATCTGATGGTCCCTATGCAAGGTAAGATGTTTGATTTTGGGTGGAAAGCCTTACCTTACCTTAAAGTTACCAAGAGTGACCCCATGGGTATGCAATCCAGCACATTTGCTCTATTTCTTCAAGTCTTAAAGAACGATGATAACATCTCTGGCGTTCTCTCGCTCTGTTTTTTCATCATCGTCGACGTCAAAAGAGCTTTACAATTTCGATCACCGATAAAAGCATCCGCCGGGGGAGTTGCGTTCCGCCGTAGACGGAGAAGTTTTCTCCCTCACAAACTCTCGTATTTTTTCATCGTGCTTTTGGAATTTCGCGAGTCTTCGGTTTGCAGCGCTAAGGAGGGTTAA 942 45.75 MRKSNTRLLSPIFTIVRFHSTTPFPPDLNPSLSRPNYKSSVFSHQGFGEGWLMLRRVPAEEAMRAASRVRGLMIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYRETEGDTKGSAKGGDASAKKEAHSTPISQIAHQGSLSQGVNYASSQSQAQHLMVPMQGKMFDFGWKALPYLKVTKSDPMGMQSSTFALFLQVLKNDDNISGVLSLCFFIIVDVKRALQFRSPIKASAGGVAFRRRRRSFLPHKLSYFFIVLLEFRESSVCSAKEG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34378623 34388694 - CmPI595203_10g027780.1 Cmu10g2778 428308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2778 313 Gene3D Histone, subunit A 72 198 IPR009072 GO:0046982(InterPro)
Cmu10g2778 313 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 74 196 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Cmu10g2778 313 MobiDBLite consensus disorder prediction 152 172 - -
Cmu10g2778 313 ProSitePatterns NF-YB/HAP3 subunit signature. 96 112 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2778 313 MobiDBLite consensus disorder prediction 152 167 - -
Cmu10g2778 313 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 129 IPR003958 -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 112 130 - -
Cmu10g2778 313 PRINTS CCAAT-binding transcription factor subunit A signature 131 149 - -
Cmu10g2778 313 SUPERFAMILY Histone-fold 74 169 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1240 Cmu-Chr10:5304306 Cmu10g2778 Cmu-Chr10:34378623 5.00E-36 dispersed
Cmu10g1258 Cmu-Chr10:5472870 Cmu10g2778 Cmu-Chr10:34378623 7.10E-27 dispersed
Cmu10g2778 Cmu-Chr10:34378623 Cmu02g1376 Cmu-Chr2:27393942 1.70E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7071 PF00808 CBFD_NFYB_HMF 1.40E-21 CL0012 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2778 K08065 - csv:101212699 249.98