Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2779 ATGGACGCCAAGCTTCTGCTTCTGCTTCTGCTTCTTCTCTTTCTGTTGGACGTCTCCTTTTCTCAGATGCCAGGTTTTGTGAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGCAACTTCGACAATAACAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCTACTCCTACTGTAAGCGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACACTTGAGCTTCGGCAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCGATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTACGAGCCTGGTTTTACCAACTTAACCTTGCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCTGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGCTACCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTAGTTTTTGACTACTCTAGAAACATTAATCTTCACGAAGGGGGAAAAAAAAACCACGTTTATATCATTGTGGGTTCAATAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTACTTCTTGCAAAAAGGAAGAAAACGATATCGTGAACAAGATCTACTTGAAGAATCATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTATTGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTATGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTTCAGGGAAGACGAGAATTTGCAAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTCTCAAGAACAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAGGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGTCTCTCAAAGCTTGCGGTGGATGGCGCCTCCCATGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGACCCAGAGTATTATATCTCTCAGCAGTTAACAGACAAGAGCGATGTATATAGTTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATCGATCCGTCGCTGCGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTTAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCCATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCATTTGACGAGTCCATTGCTCGACCTACTGCAAGGTTCGATTTCGTTGAATTTAACTCTCAAACTTATATTTTGAAGCTTGATTGTGTTGATCTTGTCAATGCCTTTAACCATAAAAAATGTGATTTGTCTGATTTGAGTAGCTTGGTGGAGGAGATTGTCTCCTTGTTTGAGGTTGCCCGTATTATGTCCTTAGCATAG 2934 40.7 MDAKLLLLLLLLLFLLDVSFSQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLVFDYSRNINLHEGGKKNHVYIIVGSIIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESSLPVQRFASSKGDAPKETAHCFSVIEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYSQEQDRSMLVYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTARFDFVEFNSQTYILKLDCVDLVNAFNHKKCDLSDLSSLVEEIVSLFEVARIMSLA 977
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 34395656 34404637 - CmPI595203_10g027790.1 Cmu10g2779 428309
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2779 977 Pfam Leucine Rich repeats (2 copies) 458 492 IPR025875 -
Cmu10g2779 977 SUPERFAMILY Protein kinase-like (PK-like) 584 868 IPR011009 -
Cmu10g2779 977 Gene3D Ribonuclease Inhibitor 374 520 IPR032675 -
Cmu10g2779 977 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 672 881 - -
Cmu10g2779 977 Pfam Malectin-like domain 29 359 IPR024788 -
Cmu10g2779 977 Gene3D Phosphorylase Kinase; domain 1 571 671 - -
Cmu10g2779 977 Gene3D Transferase(Phosphotransferase) domain 1 672 894 - -
Cmu10g2779 977 SUPERFAMILY L domain-like 395 502 - -
Cmu10g2779 977 PANTHER OS07G0107800 PROTEIN-RELATED 455 876 - -
Cmu10g2779 977 CDD STKc_IRAK 602 869 - -
Cmu10g2779 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 718 730 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2779 977 SMART serkin_6 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2779 977 FunFam Leucine-rich repeat protein kinase family protein 371 521 - -
Cmu10g2779 977 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524(InterPro)
Cmu10g2779 977 ProSiteProfiles Protein kinase domain profile. 596 873 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2779 977 FunFam Leucine-rich repeat receptor-like protein kinase 573 671 - -
Cmu10g2779 977 Pfam Protein kinase domain 599 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0239 Cmu-Chr8:5357392 Cmu10g2779 Cmu-Chr10:34395656 1.40E-61 dispersed
Cmu09g0870 Cmu-Chr9:8473734 Cmu10g2779 Cmu-Chr10:34395656 3.10E-97 dispersed
Cmu10g2779 Cmu-Chr10:34395656 Cmu11g1667 Cmu-Chr11:28929823 9.80E-105 dispersed
Cmu05g2165 Cmu-Chr5:31140349 Cmu10g2779 Cmu-Chr10:34395656 2.50E-28 transposed
Cmu05g2669 Cmu-Chr5:35233172 Cmu10g2779 Cmu-Chr10:34395656 8.10E-242 transposed
Cmu06g0150 Cmu-Chr6:1538873 Cmu10g2779 Cmu-Chr10:34395656 4.20E-105 transposed
Cmu07g0241 Cmu-Chr7:2419371 Cmu10g2779 Cmu-Chr10:34395656 1.10E-07 transposed
Cmu10g2779 Cmu-Chr10:34395656 Cmu05g1115 Cmu-Chr5:10569044 7.10E-63 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75875 PF12819 Malectin_like 1.80E-77 CL0202 Cmu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2779 - - - 0.0