Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2779 | ATGGACGCCAAGCTTCTGCTTCTGCTTCTGCTTCTTCTCTTTCTGTTGGACGTCTCCTTTTCTCAGATGCCAGGTTTTGTGAGTTTGGACTGTGGAGGTCAAGAAAGTTTCACTGATGATATTGGTCTGGAGTGGGTTCCAGATACTCAAGTTCGTTTTGGAGAAGCAATTAACATTTCTGTTGCAAATGAGACAAGGAAGCAATATATGACTTTAAGACACTTTCCTGCTGATTCCAGGAAGTACTGTTACTCACTCAATGTCACTAGTAGAACACGTTACCTTCTCAGAGCAACATTTTTATATGGCAACTTCGACAATAACAACGTGTATCCAAAATTTGACATTTCCCTTGGGGCAACTCACTGGGCAACAATTGTCATATCTGACGCCAACACTATCGAGGTTCGAGAGCTCATATTTCTGGCTTCTACTCCTACTGTAAGCGTTTGTTTGTCAAATGCTACAACTGGACAGCCATTCATATCCACACTTGAGCTTCGGCAATTTAATGGCTCTATCTACTATACTGAATTTGAGGATCAGTTTTACCTGAGTGTCTCAGCAAGGATTAATTTTGGAGCAGATTCCGAAGCTCCAGTAAGGTATCCTGATGATCCATTTGACCGGATATGGGAGTCGGACTCTGTGAGAAAAGCAAATTACCTTGTTGATGTTGCTGCTGGTACAGAAAAAGTTTCCACTAAATTACCGATAGATGTAGATAGAGATGAAAGACCACCTCAAAAAGTAATGCAGACAGCTGTAGTTGGCAGAAATGGTTCATTAACTTACCGGTTAAATTTGGATGGTTTTCCTGGCTTTGGATGGGCAGTCACCTACTTTGCAGAAATTGAAGACTTGGGTCCAACTGATACAAGAAAATTCAGGCTTGTACTTCCCGGAATGCCTGATATCAGCAAAGCTGTAGTCAACATTGAAGAAAATGCTCAAGGAAAATATCGGCTTTACGAGCCTGGTTTTACCAACTTAACCTTGCCTTTTGTATTATCTTTTCGGTTTGGGAAAACATCAGATTCTTCATTGGGACCTCTGTTAAATGCTATGGAGATTAACAAGTATCTTGAAAAAAGTGATGGTTCTCTAGATGGAGCAGTTGTTGCTAGTGTAATTTCAAAATTTTCATCTTCAGATTGGGATGAAGGTGGTGATCCATGCATGCCAGTTCCTTGGTCATGGTTGCAATGTAACTCTGATCCACGGCCAAGAATAGTTAAAATTTCATTGTCCAAAAAGAATTTGACGGGGAACATCCCTACAGACCTTGCAAAGTTGAGCGGTTTAGTTGAATTATGGCTTGATGGAAATTCATTTGTTGGTCCTATACCTGATTTTACTGGATGCGTGGACTTGAAAATCCTCCATCTTGAGAACAACCAGTTGACTGGAGAGCTACCTTCCTCTTTAGCAAATCTACCAAATTTACGGGAGCTGTATGTGCAGAATAACATGTTATCTGGAACAGTGCCCTCTGGTCTTCTCAATAAAAACCTAGTTTTTGACTACTCTAGAAACATTAATCTTCACGAAGGGGGAAAAAAAAACCACGTTTATATCATTGTGGGTTCAATAATTGGTGCTGTTGTCCTGCTGTTGGCTACTGTGGTATCTTGCTACTTCTTGCAAAAAGGAAGAAAACGATATCGTGAACAAGATCTACTTGAAGAATCATCCTTGCCTGTACAAAGATTTGCCTCTTCAAAGGGTGATGCCCCCAAGGAAACCGCACATTGCTTCAGTGTTATTGAAATTGTAGAAGCAACAAGAGATTTTGAAAGAAAAATTGGGTCTGGAGGTTTTGGTGTTGTATACTATGGGAAATTAAATGACGGAAAAGAAATTGCAGTTAAAGTTTTGACTAGTAATTCCTTTCAGGGAAGACGAGAATTTGCAAACGAGGTGACTCTTCTTTCAAGGATTCATCACAGAAATCTTGTACAATTTCTGGGATATTCTCAAGAACAGGACAGAAGTATGCTTGTCTATGAGTTCATGCATAATGGAACTCTCAAAGAACATCTTTATGGTCCACTAACACGGGAAAAAACTATCAGTTGGATAAAGCGCCTCGAGATTGCTGAGGATGCTGCTAGAGGGATTGAGTACCTTCATACAGGCTGTATTCCAGCAATTATTCATAGGGACTTGAAAAGCAGTAATATTCTTCTTGACAGGCACATGAAAGCAAAGGTTTCAGACTTTGGTCTCTCAAAGCTTGCGGTGGATGGCGCCTCCCATGTGTCCAGCATCGTTCGGGGAACTGTAGGATATTTGGACCCAGAGTATTATATCTCTCAGCAGTTAACAGACAAGAGCGATGTATATAGTTTTGGTGTTATTCTTCTCGAGTTGATATCTGGTCAAGAAGCTATATCTAATGTAAACTTTGGTGTTAATTGCCGCAACATCGTCCAGTGGGCAAAATTACACATTGAGAGCGGGGACATTCAAGGGATCATCGATCCGTCGCTGCGCAATGAATATGACATTCAATCAATGTGGAAAATCGCAGAGAAAGCGTTGATGTGTGTCCAGCCACATGGGCACCTTAGGCCATCCATATCTGAAGTGCTGAAGGAGATACAGGATTCAATTTTGATTGAAAGGGAAGCTACTGCAACTAGAGAAGGTAACTCTGATGACATGTCTAGAAACTCAGTCCATTCCATGAATATGGGATCTCTTGATTTGTGTGGAAACGAAAACTACGTGTCATTTGACGAGTCCATTGCTCGACCTACTGCAAGGTTCGATTTCGTTGAATTTAACTCTCAAACTTATATTTTGAAGCTTGATTGTGTTGATCTTGTCAATGCCTTTAACCATAAAAAATGTGATTTGTCTGATTTGAGTAGCTTGGTGGAGGAGATTGTCTCCTTGTTTGAGGTTGCCCGTATTATGTCCTTAGCATAG | 2934 | 40.7 | MDAKLLLLLLLLLFLLDVSFSQMPGFVSLDCGGQESFTDDIGLEWVPDTQVRFGEAINISVANETRKQYMTLRHFPADSRKYCYSLNVTSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWATIVISDANTIEVRELIFLASTPTVSVCLSNATTGQPFISTLELRQFNGSIYYTEFEDQFYLSVSARINFGADSEAPVRYPDDPFDRIWESDSVRKANYLVDVAAGTEKVSTKLPIDVDRDERPPQKVMQTAVVGRNGSLTYRLNLDGFPGFGWAVTYFAEIEDLGPTDTRKFRLVLPGMPDISKAVVNIEENAQGKYRLYEPGFTNLTLPFVLSFRFGKTSDSSLGPLLNAMEINKYLEKSDGSLDGAVVASVISKFSSSDWDEGGDPCMPVPWSWLQCNSDPRPRIVKISLSKKNLTGNIPTDLAKLSGLVELWLDGNSFVGPIPDFTGCVDLKILHLENNQLTGELPSSLANLPNLRELYVQNNMLSGTVPSGLLNKNLVFDYSRNINLHEGGKKNHVYIIVGSIIGAVVLLLATVVSCYFLQKGRKRYREQDLLEESSLPVQRFASSKGDAPKETAHCFSVIEIVEATRDFERKIGSGGFGVVYYGKLNDGKEIAVKVLTSNSFQGRREFANEVTLLSRIHHRNLVQFLGYSQEQDRSMLVYEFMHNGTLKEHLYGPLTREKTISWIKRLEIAEDAARGIEYLHTGCIPAIIHRDLKSSNILLDRHMKAKVSDFGLSKLAVDGASHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNVNFGVNCRNIVQWAKLHIESGDIQGIIDPSLRNEYDIQSMWKIAEKALMCVQPHGHLRPSISEVLKEIQDSILIEREATATREGNSDDMSRNSVHSMNMGSLDLCGNENYVSFDESIARPTARFDFVEFNSQTYILKLDCVDLVNAFNHKKCDLSDLSSLVEEIVSLFEVARIMSLA | 977 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 34395656 | 34404637 | - | CmPI595203_10g027790.1 | Cmu10g2779 | 428309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2779 | 977 | Pfam | Leucine Rich repeats (2 copies) | 458 | 492 | IPR025875 | - | |
Cmu10g2779 | 977 | SUPERFAMILY | Protein kinase-like (PK-like) | 584 | 868 | IPR011009 | - | |
Cmu10g2779 | 977 | Gene3D | Ribonuclease Inhibitor | 374 | 520 | IPR032675 | - | |
Cmu10g2779 | 977 | FunFam | LRR receptor-like serine/threonine-protein kinase IOS1 | 672 | 881 | - | - | |
Cmu10g2779 | 977 | Pfam | Malectin-like domain | 29 | 359 | IPR024788 | - | |
Cmu10g2779 | 977 | Gene3D | Phosphorylase Kinase; domain 1 | 571 | 671 | - | - | |
Cmu10g2779 | 977 | Gene3D | Transferase(Phosphotransferase) domain 1 | 672 | 894 | - | - | |
Cmu10g2779 | 977 | SUPERFAMILY | L domain-like | 395 | 502 | - | - | |
Cmu10g2779 | 977 | PANTHER | OS07G0107800 PROTEIN-RELATED | 455 | 876 | - | - | |
Cmu10g2779 | 977 | CDD | STKc_IRAK | 602 | 869 | - | - | |
Cmu10g2779 | 977 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 718 | 730 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu10g2779 | 977 | SMART | serkin_6 | 596 | 873 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu10g2779 | 977 | FunFam | Leucine-rich repeat protein kinase family protein | 371 | 521 | - | - | |
Cmu10g2779 | 977 | ProSitePatterns | Protein kinases ATP-binding region signature. | 602 | 624 | IPR017441 | GO:0005524(InterPro) | |
Cmu10g2779 | 977 | ProSiteProfiles | Protein kinase domain profile. | 596 | 873 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu10g2779 | 977 | FunFam | Leucine-rich repeat receptor-like protein kinase | 573 | 671 | - | - | |
Cmu10g2779 | 977 | Pfam | Protein kinase domain | 599 | 866 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g0239 | Cmu-Chr8:5357392 | Cmu10g2779 | Cmu-Chr10:34395656 | 1.40E-61 | dispersed | |
Cmu09g0870 | Cmu-Chr9:8473734 | Cmu10g2779 | Cmu-Chr10:34395656 | 3.10E-97 | dispersed | |
Cmu10g2779 | Cmu-Chr10:34395656 | Cmu11g1667 | Cmu-Chr11:28929823 | 9.80E-105 | dispersed | |
Cmu05g2165 | Cmu-Chr5:31140349 | Cmu10g2779 | Cmu-Chr10:34395656 | 2.50E-28 | transposed | |
Cmu05g2669 | Cmu-Chr5:35233172 | Cmu10g2779 | Cmu-Chr10:34395656 | 8.10E-242 | transposed | |
Cmu06g0150 | Cmu-Chr6:1538873 | Cmu10g2779 | Cmu-Chr10:34395656 | 4.20E-105 | transposed | |
Cmu07g0241 | Cmu-Chr7:2419371 | Cmu10g2779 | Cmu-Chr10:34395656 | 1.10E-07 | transposed | |
Cmu10g2779 | Cmu-Chr10:34395656 | Cmu05g1115 | Cmu-Chr5:10569044 | 7.10E-63 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75875 | PF12819 | Malectin_like | 1.80E-77 | CL0202 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2779 | - | - | - | 0.0 |