Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2781 ATGAGTCTGTTTACTGAAGGTGGAGCTTCAAACCCAATGCTGGATCTTAACCTTGAAGTTGTTTCCTCCGAGTCGGCTTCCGATTCGGTTGAGATGGTTACTGAGAGGTTTCTGCAGTTTCCGGCGAATAGAATGGAAAGCGCCGGTAGCTTCAACTCGTCCTCCGTCGTTAACGGCGATCTTTCCGCCAGTACCACCGGCGACGAGGACTCGTCTTCTAACGCCGATGAGGCGTTCCCGTTCACCTTTGTTAAAGACTCCGCGGTTCAAGAAAGCTTAACGGCGAAATCACTCTGTGTTTTCGATGACCCCCGCGATCAGACGATGGAGCTCTTCCCATTAACAGGCGGGTTCTCTTCTGGTTCGAGTCCTCAGAAGCGGTGGCCGGAGGTTTCTCCGCCGGAATTTGGTTATTGTGGCGGTGTGCCGGAGCGGCGAATAAACGCACCGCCGGCGCAGCAACAGCATCAGCCAATGAGAAAGAACCGACGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGTGGAGTTACTTTTTATCGACGAACAGGAAGATGGGAATCACATATTTGGGACTGCGGGAAACAGGTTTATTTAGGTGGTTTCGATACTGCACATGCTGCTGCCAGGGCATATGATCGAGCGGCGATCAAGTTCCGTGGGATCGATGCAGATATCAATTTCAATGTCTGTGATTATGATGAAGATATTAAGCAGATGAGTAATTTCACCAAGGAAGAGTTTGTTCATATTCTTCGTCGCCATAGCACTGGATTTTCAAGGGGAAGCTCGAAATACAGAGGAGTCACTCTGCATAAATGTGGGCGATGGGAAGCTCGAATGGGCCAGTTTTTGGGCAAGAAGTACATATATCTTGGACTCTTTGATAGTGAGATTGAGGCTGCAAGGGCATATGACAAGGCTGCCTTAAGATGCAATGGTAAGGAGGCTGTTACAAACTTTGAACCAAGTTCTTATGTGGCAGAGATGGCTTCTGAGACTAACACAGGAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTTTCTGATGTCCGAAGTGAGAGCATTGGCATGTTTGGTAATGGTATTCATCGCAGCTCACACGACATCATTGTCGACAGAAGAGCTATGCCAGAGAACTCTGCTTCAGCAGCAATTAGATCATCTCAGCCATATAGCTTTGCAGTGCCTTCTAATTACCATTCTTCTTGGAATGTTTCAAATTCCAGTTTCTTTCCCATCTCCAGGGAAAGGGCAACAGAGATGAGGATGGGGGTTGGGTCCTGGGAGTGGCAAATCCATGGCCACCCGAGTGAAACCTCTGTTCCACGCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCATCAACTGTCATTTCATCAGCATCCCCTGCTGTTGGTGAAATCCATTTCCCGGCAATCTTCTACTGTAGGAGTTGA 1467 48.33 MSLFTEGGASNPMLDLNLEVVSSESASDSVEMVTERFLQFPANRMESAGSFNSSSVVNGDLSASTTGDEDSSSNADEAFPFTFVKDSAVQESLTAKSLCVFDDPRDQTMELFPLTGGFSSGSSPQKRWPEVSPPEFGYCGGVPERRINAPPAQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGIDADINFNVCDYDEDIKQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALRCNGKEAVTNFEPSSYVAEMASETNTGENNQILDLNLGIAPPNLSDVRSESIGMFGNGIHRSSHDIIVDRRAMPENSASAAIRSSQPYSFAVPSNYHSSWNVSNSSFFPISRERATEMRMGVGSWEWQIHGHPSETSVPRFSAAASSGFPSSSSSSTVISSASPAVGEIHFPAIFYCRS 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34420501 34423917 - CmPI595203_10g027810.1 Cmu10g2781 428311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2781 488 Pfam AP2 domain 172 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 Pfam AP2 domain 263 312 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 83 356 - -
Cmu10g2781 488 MobiDBLite consensus disorder prediction 49 74 - -
Cmu10g2781 488 MobiDBLite consensus disorder prediction 146 173 - -
Cmu10g2781 488 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 Gene3D AP2/ERF domain 171 229 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Cmu10g2781 488 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677(InterPro)
Cmu10g2781 488 SMART rav1_2 264 327 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 SMART rav1_2 172 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 CDD AP2 171 229 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2781 488 SUPERFAMILY DNA-binding domain 263 322 IPR016177 GO:0003677(InterPro)
Cmu10g2781 488 CDD AP2 263 323 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2781 Cmu-Chr10:34420501 Cmu11g0801 Cmu-Chr11:9496474 1.60E-39 dispersed
Cmu10g2781 Cmu-Chr10:34420501 Cmu02g2070 Cmu-Chr2:34359105 2.10E-116 wgd
Cmu10g2781 Cmu-Chr10:34420501 Cmu02g1374 Cmu-Chr2:27377319 1.80E-67 wgd
Cmu10g2781 Cmu-Chr10:34420501 Cmu04g0914 Cmu-Chr4:23629755 9.20E-104 wgd
Cmu10g2781 Cmu-Chr10:34420501 Cmu05g1107 Cmu-Chr5:10487357 1.80E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7072 PF00847 AP2 1.30E-09 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2781 K09284 - csv:101211242 838.565