Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2787 ATGGCTGCTCTCGTGGAAGAGGTTCTACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCTCTGTTCGACGGAACTACTAGGTTATATACTGCTTACATATGCCCCTATGCTCAACGTGTGTGGATCACCCGAAATTACAAGGGACTACAAGATAAAATTAAGCTAGTTCCTCTCAACCTCTATAACAGGCCTGACTGGTATAAGGAGAAAGTATACCCTATAAACAAGGTGCCATCTCTAGAACATAATGGGAAAGTTATTGGAGAAAGTCTTGATCTGATCAAATATGTTGATAGCAACTTTGAAGGACCTTCTCTTCTCCCAGATGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACAGCGATACGTTTAACATCGCAGTAGCTTCTTCATTTAAAGGCGACACCGCAAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGCAAAAATTTGATGGCCCCTTCTTCCTTGGAGAGATCAGTCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCAGGTTTTCTTATTAGAGGCTCTCAAGATTGACATCACAGAAGGAAGGCCGAAGCTAGCTGCATGGATTGAGGAGCTCAATAAGATTGATGCATACAAGCAAACAAAAGCTGATCCCAAGCTAATTGTTGAAGCTTATACAAAGCGATTTTTGTGGAGACGATGGGAAAGGAAAGAGGAAGTCGGAGAGGACAGAGAACTAAGGGAGAGAAAAGAAAGAAACGTGGAAGAAATTCCACCTCCGTCGTTGGATGCCACCGCCGAACAACCTCCCCTGTTTGATGGAACTACCAGGTTGTATACTGCTTACATTTGCCCTTATGCACACCGTGTTTGGATCATCCGGAATTACAAGGGACTACAACATAAAATAAAGCTTGTTCCTCTCAATCTTATTAATAGGCCTGACTGGTATAAGGAGAAAGTGTACCCTATGAACAAGGTGCCATCTCTGGAACATAATGGAAAAGTTATCGGAGAAAGCCTTGATCTGCTCAAATATATTGATAGCAACTTTGAAGGACCTTCTCTACTCCCAGATCCTGCTAAAAGAGAGTATGCTGAAGAGTTGCTATCCTACGGCGAAACGTTTAACGGCGCAATAATCGATTCGTTTAAAGGTGACACCGCTAAGGAAGCAGGTGCTCAATTTGATTACTTGGAAAATGCTTTGGGAAAATTTGATGGCCCGTTCCTCCTTGGAGAAATCAGCCAGGTGGATATAGCATACATTCCATTTGTTGAAAGGTTCCACATTTTCTTATTAGAGGCTCTCAAAATTGACATCACAGAAGGAAGGCCTAAATTACTTGCCTGGATTGAGGAGTTCAATAAGATTGATGCGTACAAGCAAACAAAAGTTGATCCCAAAGTTAAAGAACGAGTGCTGGAGAGGCCGTATATTGCCTTAACGAATAAGCAGTACATCATGTTGACGAGCAATTTTGATGTTTGTACTTCTTATCTCCTTTCTATACCTCCACCCGCTAATGGCGGAGAGGAGCATTCAAATGCTCCACATTCTCGAGCCGAGAAGTATGTTGTTGTCCTTGTTGAGCAAGCGCTTATTGGAGGTAGATTCCAGGTGGGTCGGTATATTGGGGATGCCTATGGATTTGCTCTGAGACCTCAACACACGCATAGATATAGAGAGCATGCTAACATTTACAAGGAGGAGGAAGAGGAAAGGTGTGATAAGTGGAAGAACTTTCTTGATCAAGTAGCTACATCAGTTCAAGTGTGTCCTCTTGAGGAGGCAAATACAAATACACTGCAGGCTGAAACTAGCGAGCACCAAGAAGAGACCGTATCGGGGAGGAGTAGCACAGGGGATGACTCAACTGGCTCAAAATCTGATTCTGTTGACACCACAGATAGTGTTCCTACAAAACTCTTAGAGCCTCCAGTAGAAACACAAAAACGTGTTGTTCAGACTTGGTGTCAAACTAGGCCGTCTCTAAATGCCATTGAGATTATGATGAGCTCTCGTGTTAAAAAGAAGATTATGAAAGATGAAAAGACAAGTAATGGTGGAAATCATCTTCCACTGCTAGAGGAGGCAGAATCTTTAGAAGGAACATCTGTGGCAAACTCTGAAGAGGAAGAAGCTTGCTTCAGTGGAGCACTAAATCATAGTACATCTGCTACTGGGGCAGAAAGTAGGATGGACGAATCCATTTCTAACAGTGTGAAGCCCTCCGAGAGAGATGGTGTTGTGGGGGATGGAGTTTCTCAAGATCAATTGTTTACATGGAAAGAAGAATTAGAATGCCTTGTTCGTGGGGGGTTGCCAAAAGATCTGAGGGGAGAGGTGTGGCAAGCCTTTGTAGGTGTAAAGACCCGTCGAATTGAGAAATATTACCAGGATTTGTTGGACCAAGAAACTAATTGTAGTGCAGATAACGAGAACAATATCCCATCTGGTGTACCGATAAAATTGAAAAAACAGATTGAGAAGGATATACCACGGACATTTCCTGGTCATCCTGCCCTGGATGAGAATGGTAGAGACTCCTTAAGGCGTTTACTTTTAGCATATGCTCTTCACAATCCCTCTGTTGGTTATTGTCAGGCAATGAATTTCTTTGCGGGCTTGTTGCTACTCCTGATGCCCGAGGAGAATGCCTTTTGGACTTTGGTTGGAATAATAGATGACTATTTTGATGGATATTACACTGAGGAAATGATAGAATCGCAGGTGGACCAGCTTGTTTTTGAGGAATTGATGCGTGAAAGATTTCCTAAATTGGTTAAACATTTGGATTACTTGGGAGTGCAAGTGGCATGGATCACAGGACCTTGGTTCCTTTCCATTTTTGTAAATATGCTTCCGTGGGAGAGTGTACTCCGAGTTTGGGATGTGCTTCTGTTTGAAGGCAACAGAGTCATGCTGTTCCGGACAGCACTTGCATTGATGGAACTATATGGTCCTGCATTAGTTACTACAAAAGATGCGGGGGACGCCATAACTCTGTTACAATCCCTTGCTGGTTCCACATTTGATAGTAGCCAGCTTGTGTTGACTGCTTGCATGGGTTTTCTGACTGTAACTGAAGTAAGACTAGTAGAGTTGAGAGAAAAGCTCCGACCATCTGTGCTAGCTGTAATTGAAGAAAGAACAAAGAAGGGTCGGGTTTGGAAGGATTCCAAAGGGCTAGCTTCCAAGCTTTATAGTTTCAAGCATGATCCCAGATCACCTATGGAGAGGAAAAAGACAGCTGCAGGATCCGATGTCGGATCCTGTACCCCTAATCTGGATGACTTCCTTAGTGGATTAGCCGGTGATTCAGAAACAGAATCACTCCCAGACCTTCAAGAACAAGTAGTATGGTTGAAGGTTGAGTTGTGCAGGTTGCTGGAGGAAAAAAGATCTGCGGTTCTAAGAGCCGAGGAGCTAGAAACAGCACTTATGGAAATGGTCACCCAAGATAATCGACGACTATTAAGTGCCAGGGTTGAACAACTGGAGATAGAGGTAGCCGAGCTAAAGAAAACTCTAGCAGAGAAGAAAGAACAAGAAGTTGCAATGCTTCAGTTGTTGATGCGTGTTGAGCAAGAGCAAAGAGTAACCGAGGAAGCTAGAATAAACGCCGAGCAAGACGTAGCAGCTCAAAAATATGCTGTTCATATGCTTCAGGATAAATATGAGAAAGCTATGGCTTCACTTGCCGAGATGGAGAAAAGGGTGGTGATGGCCGAATCCATGTTGGAGGCTACATTACAATATGAATCTGGCCAAGTTAAAGCAATGTCATCTCCTGGGTCGCGTAATCAAGGATCTGCACAGGAAAATCAAAGAAAGGTTGGTTTGCTGCCATTTGCACTAGGCTGGCGAGATCGAAACAAGGGTAAATCGACCGAAGAACCTTCTGAATTGAAGATGATGAACGATGGAAGCAAAAGCAAATAA 3951 43.38 MAALVEEVLPPSLDATAEQPPLFDGTTRLYTAYICPYAQRVWITRNYKGLQDKIKLVPLNLYNRPDWYKEKVYPINKVPSLEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPAKREYAEELLSYSDTFNIAVASSFKGDTAKEAGAQFDYLENALQKFDGPFFLGEISQVDIAYIPFVERFQVFLLEALKIDITEGRPKLAAWIEELNKIDAYKQTKADPKLIVEAYTKRFLWRRWERKEEVGEDRELRERKERNVEEIPPPSLDATAEQPPLFDGTTRLYTAYICPYAHRVWIIRNYKGLQHKIKLVPLNLINRPDWYKEKVYPMNKVPSLEHNGKVIGESLDLLKYIDSNFEGPSLLPDPAKREYAEELLSYGETFNGAIIDSFKGDTAKEAGAQFDYLENALGKFDGPFLLGEISQVDIAYIPFVERFHIFLLEALKIDITEGRPKLLAWIEEFNKIDAYKQTKVDPKVKERVLERPYIALTNKQYIMLTSNFDVCTSYLLSIPPPANGGEEHSNAPHSRAEKYVVVLVEQALIGGRFQVGRYIGDAYGFALRPQHTHRYREHANIYKEEEEERCDKWKNFLDQVATSVQVCPLEEANTNTLQAETSEHQEETVSGRSSTGDDSTGSKSDSVDTTDSVPTKLLEPPVETQKRVVQTWCQTRPSLNAIEIMMSSRVKKKIMKDEKTSNGGNHLPLLEEAESLEGTSVANSEEEEACFSGALNHSTSATGAESRMDESISNSVKPSERDGVVGDGVSQDQLFTWKEELECLVRGGLPKDLRGEVWQAFVGVKTRRIEKYYQDLLDQETNCSADNENNIPSGVPIKLKKQIEKDIPRTFPGHPALDENGRDSLRRLLLAYALHNPSVGYCQAMNFFAGLLLLLMPEENAFWTLVGIIDDYFDGYYTEEMIESQVDQLVFEELMRERFPKLVKHLDYLGVQVAWITGPWFLSIFVNMLPWESVLRVWDVLLFEGNRVMLFRTALALMELYGPALVTTKDAGDAITLLQSLAGSTFDSSQLVLTACMGFLTVTEVRLVELREKLRPSVLAVIEERTKKGRVWKDSKGLASKLYSFKHDPRSPMERKKTAAGSDVGSCTPNLDDFLSGLAGDSETESLPDLQEQVVWLKVELCRLLEEKRSAVLRAEELETALMEMVTQDNRRLLSARVEQLEIEVAELKKTLAEKKEQEVAMLQLLMRVEQEQRVTEEARINAEQDVAAQKYAVHMLQDKYEKAMASLAEMEKRVVMAESMLEATLQYESGQVKAMSSPGSRNQGSAQENQRKVGLLPFALGWRDRNKGKSTEEPSELKMMNDGSKSK 1316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34461129 34479362 - CmPI595203_10g027870.1 Cmu10g2787 428317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2787 1316 Pfam Rab-GTPase-TBC domain 780 991 IPR000195 -
Cmu10g2787 1316 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 25 106 IPR004045 -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 1261 1316 - -
Cmu10g2787 1316 Pfam Glutathione S-transferase, N-terminal domain 29 105 IPR004045 -
Cmu10g2787 1316 Pfam Glutathione S-transferase, N-terminal domain 280 356 IPR004045 -
Cmu10g2787 1316 CDD GST_C_Lambda 111 227 - -
Cmu10g2787 1316 SMART tbc_4 773 997 IPR000195 -
Cmu10g2787 1316 FunFam Glutathione S-transferase L2, chloroplastic 251 354 - -
Cmu10g2787 1316 SUPERFAMILY GST C-terminal domain-like 354 471 IPR036282 -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 620 641 - -
Cmu10g2787 1316 SUPERFAMILY GST C-terminal domain-like 102 231 IPR036282 -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 244 259 - -
Cmu10g2787 1316 ProSiteProfiles TBC/rab GAP domain profile. 776 973 IPR000195 -
Cmu10g2787 1316 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 805 903 - -
Cmu10g2787 1316 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 761 933 IPR035969 -
Cmu10g2787 1316 Gene3D - 904 1043 - -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 604 650 - -
Cmu10g2787 1316 FunFam Glutathione S-transferase L2, chloroplastic 1 103 - -
Cmu10g2787 1316 PANTHER GLUTATHIONE S-TRANSFERASE L1 2 238 IPR044629 GO:0004364(InterPro)|GO:0004364(PANTHER)|GO:0010731(PANTHER)
Cmu10g2787 1316 FunFam Lambda class glutathione S-transferase 104 234 - -
Cmu10g2787 1316 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 910 1025 IPR035969 -
Cmu10g2787 1316 FunFam TBC1 domain family member 8B 904 1044 - -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 244 268 - -
Cmu10g2787 1316 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 793 903 - -
Cmu10g2787 1316 Gene3D Glutaredoxin 252 354 - -
Cmu10g2787 1316 Gene3D Glutaredoxin 1 103 - -
Cmu10g2787 1316 Gene3D - 355 480 - -
Cmu10g2787 1316 Gene3D - 104 234 - -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 1261 1279 - -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 728 753 - -
Cmu10g2787 1316 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 276 357 IPR004045 -
Cmu10g2787 1316 SFLD Main (cytGST) 28 208 - -
Cmu10g2787 1316 SFLD Glutathione Transferase (cytosolic) 28 208 IPR040079 -
Cmu10g2787 1316 SFLD Glutathione Transferase (cytosolic) 279 457 IPR040079 -
Cmu10g2787 1316 SUPERFAMILY Thioredoxin-like 271 358 IPR036249 -
Cmu10g2787 1316 Coils Coil 1159 1214 - -
Cmu10g2787 1316 Coils Coil 1222 1249 - -
Cmu10g2787 1316 Pfam Glutathione S-transferase, C-terminal domain 146 205 - -
Cmu10g2787 1316 Pfam Glutathione S-transferase, C-terminal domain 396 455 - -
Cmu10g2787 1316 MobiDBLite consensus disorder prediction 1294 1316 - -
Cmu10g2787 1316 SUPERFAMILY Thioredoxin-like 20 107 IPR036249 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2787 Cmu-Chr10:34461129 Cmu10g2788 Cmu-Chr10:34483023 2.30E-101 tandem
Cmu01g0960 Cmu-Chr1:13525220 Cmu10g2787 Cmu-Chr10:34461129 3.70E-16 transposed
Cmu02g0955 Cmu-Chr2:13802860 Cmu10g2787 Cmu-Chr10:34461129 1.30E-42 transposed
Cmu02g1368 Cmu-Chr2:27234817 Cmu10g2787 Cmu-Chr10:34461129 1.60E-225 transposed
Cmu04g0931 Cmu-Chr4:23765944 Cmu10g2787 Cmu-Chr10:34461129 2.00E-26 transposed
Cmu10g2787 Cmu-Chr10:34461129 Cmu02g1366 Cmu-Chr2:27219406 1.00E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2787 - - - 0.0