Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2792 ATGGAAGAATTAGAACCCCCCACTGTCATCATGGCCGCCCTCTCCGCCCTCTCTCCGCCGTGTCTCTCCGATCTCTCCCACTCCATTTTCTCCGACATTCACCACCACCGCCGCCGCCTCACCTTCATCCTCTCTTCCCCAACACTCTTCTCCCTCACTCTTCGCCACCTCAATTCCCTCTCCCTCTCCCACAAATCTCTCCTCCTTGCCCGCTTCCTCCTCTCCGCCCTCCGCCGCCTCTCCCGCCCCTTCCAGCCACCATCCAAGCTCCTCCCTTACCACCCTTCCACCGCCGCCATCTCCCCTCAAGACCTCGACGCCGCCGTCCTCCTCCTCCTCCTCTGCGAGGTCCGGCAACACAATCCAGCCGCCCTCCGAACTCCGATCACCAAATGGCGTGCGACCCTCTGTAGAATCTACTCCGATTCCCTCTTGACGATCTCAGGTGTCGCCACAGGCGGGGGTGGGGCTTTGATTCCGTTCATTGAGACGGTGGTGAGATGTTGGAAGTTCGTGGGGTTTGTTGGGAGTTGCGGAGGGAAGGCCCGGAGAGAGGTGGCGGCGTCTCCTGTGGCGGTGGTGGAGCTGCCGTCAGTGGCGGTGGGTGGTGGCGGTGGTGCGGCGGTGGAATGTGTGATTTGTAAAGAGGAGATGAGAGAAGGGAGAGACGCGTGTAAATTGCCTTGTGACCACTTATTCCATTGGCTCTGTATTTTGCCATGGCTGAGGAAACGGAACACGTGTCCCTGTTGTAGGTTTCAGCTTCCCACTGATGATATTTTCGGAGAGATCCAACGGCTCTGGGAGATCCTCCTCAAAGTGGGCTCCACGATGTGTCCATCTGATGGAGATTAA 855 58.6 MEELEPPTVIMAALSALSPPCLSDLSHSIFSDIHHHRRRLTFILSSPTLFSLTLRHLNSLSLSHKSLLLARFLLSALRRLSRPFQPPSKLLPYHPSTAAISPQDLDAAVLLLLLCEVRQHNPAALRTPITKWRATLCRIYSDSLLTISGVATGGGGALIPFIETVVRCWKFVGFVGSCGGKARREVAASPVAVVELPSVAVGGGGGAAVECVICKEEMREGRDACKLPCDHLFHWLCILPWLRKRNTCPCCRFQLPTDDIFGEIQRLWEILLKVGSTMCPSDGD 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34503948 34504802 - CmPI595203_10g027920.1 Cmu10g2792 428322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2792 284 SUPERFAMILY RING/U-box 204 258 - -
Cmu10g2792 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 258 IPR013083 -
Cmu10g2792 284 SMART ring_2 211 251 IPR001841 -
Cmu10g2792 284 Pfam Ring finger domain 210 252 IPR001841 -
Cmu10g2792 284 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Cmu10g2792 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 183 257 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cmu10g2792 284 CDD RING-H2_PA-TM-RING 210 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2792 Cmu-Chr10:34503948 Cmu10g2842 Cmu-Chr10:34905083 2.80E-12 dispersed
Cmu10g2792 Cmu-Chr10:34503948 Cmu04g0664 Cmu-Chr4:20629778 5.20E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2792 - - - 0.0