Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2811 ATGCCGACACTAGTGAGTGTTGCAAGGCAATGCTTGATGAAGGAGGCGCCAAAAGGATCTCAGATCCGTAGTTCTTGGGAATTCAATCGAAGGCTCTGCTGCTCGCCGCTTGGATTTTTTCTGTCATTTCCTTTTATTCTTGAGTTGTTCTCATCGGATTCTTCATTTTTAGGTTTCAGGAAAGGCGTCGAGATTTGGAGGAATATATATTGGATGGGAGAAGAAGCAGCTGGTTTGGCTGCAGTTACAAATGAGCCGTTGGGGAGAGAGAGCGCTTCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCTGAGTCTTTGCATAACAAGAAGCAAGCAAAAGAAGTGTCGAATGAAGACGTTCTGTCAGAAGTTTCGAATCCCGTAATTTCCCCGAAAGGGAATCATTTCCAAGATATTACTAGCCAACCTGACGAGCTAGAAAATACCAACCAAGTTGAGCGTGGGGAGCTCACGTCGGCTTGTTCGGGGAATTCAAGCTCGGAGGATATCTCAAGCGATGGAATTCGTTGCCAGAATGACGCGTCTCGAAATGACGCTGATATGTGTGATGTTGATGAGGTTTCTCGGTTTGTGATTGAAATTCCTAAGCATGCTAGTTCGACTGGCATTAGGAAGATTACGTTCAAGTTTAGCAAAAAGAAGGACAACAATGGCGCATCCATGTCAGCAGACAAAGTTCATTCTTATGGGAACTCTGACAAGGACGGTAGACCAGAACCTTCATTGGTTGATGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCTGTGCTGAGAGCAGCAGGTATCCTTTAGGTCCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTATCCGTCGAATGTTAAAAAGCTGCTGTCGACTGGTATACTTGATGGAGCTCGAGTCAAATATGTATCGACGACAAGCGAGATGAAGCTAAATGGTATTATAAATGGCGGAGGTTACATGTGCGGATGTTCAATATGCAATTATACAGCTATCCTCAGTGCTTATGAGTTTGAGCAGCATGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACTTGGAGAATGGGAGGCCGATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTGGCGGGTTCATCTGTTAACTTGGATTCATTTGAGGCTTGGAAAGCAAGTTTCCACCAGAACAGTGCAACTATTGAAGTGGAAAATGATGATGTGAAGCTTCCTAAATTGTCACATCCCATTGAGAGAGCAAGCCCTAACTTTTCCAATCCAGTCATTCAACACAAAAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTTCACAGACTACTTTTCATGCCAAATGGCCTTCCAGATGGGGCCGAGCTGGCATACTTTGTCAAAGGACAGAGAATACTTGGAGGCTACAAGCAAGGAAATGGTATTCTATGTAGTCACTGTAATCGAGAGATTAGCCCTTCCCAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAACCGTACCGCCACATTTATACTACTAATGGACTTACACTTCATGATATTGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGACAGTGATGATATGTGTGCTGCATGTGGTAATGGAGGAGATTTGATTTTCTGTGATTGCTGCCCTCGAGCTTACCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAGTTCGAAGGTTGCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTTTTTAGGTTGACCCGAGTTGTTAAAGCACCCGAGTATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCTGCTAAGTTTGATGATCGAACTGTACTGCTTTGTGATCAATGTGAAAGAGAATTCCATGTAGGCTGTCTGCGGGATAGTGGATTATGTGATCTGAAGGAACTCCCCAAGGATAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCCCTTCAGAACACAGTTCTGAATGGGGCACAGATCATTCCAGATTCATTATCAGATTTAATAATCAGAAAGCATGTTGGAAAAGGATTATTAGTTGATGGAGCTCTGAGTGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTATCCAGAAGATCTTCCATTTCTTTCAAGGGCAACTGCTATTTTTCGAGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATACCGGTTATGGTTTATGGGAGAAATATATCTGGACAAGAGTTTGGAGGAATGTATTGTGTTGTTTTAATCGTGAGGTCAATAGTTGTATCGGCTGGTCTTCTTAGGATCTTTGGTCGTGAAGTTGCCGAGCTTCCTATTGTTGCCACAAGTAGAGAACACCAGGGCAAGGGTTACTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTAAATGTGCAAAACCTTGTACTCCCGGCAGCCGAGGATGCTGAATCAATTTGGACCAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTACATGAGGGAGGTCCAGCTGACGATCTTCAATGGAACATCGATGCTAGAGAAGGAGGTGCAGCAGCCGATGTTATAA 2742 43.33 MPTLVSVARQCLMKEAPKGSQIRSSWEFNRRLCCSPLGFFLSFPFILELFSSDSSFLGFRKGVEIWRNIYWMGEEAAGLAAVTNEPLGRESASSTELKRDHQCLDEDTEPESLHNKKQAKEVSNEDVLSEVSNPVISPKGNHFQDITSQPDELENTNQVERGELTSACSGNSSSEDISSDGIRCQNDASRNDADMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDNNGASMSADKVHSYGNSDKDGRPEPSLVDDACTETSAHSWEGCAESSRYPLGPNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYVSTTSEMKLNGIINGGGYMCGCSICNYTAILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSSVNLDSFEAWKASFHQNSATIEVENDDVKLPKLSHPIERASPNFSNPVIQHKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILGGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCAACGNGGDLIFCDCCPRAYHTGCLHLQNVPEGVWSCPNCRDKVGSSSKVASGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTVLLCDQCEREFHVGCLRDSGLCDLKELPKDKWFCCDECSNIHVALQNTVLNGAQIIPDSLSDLIIRKHVGKGLLVDGALSDVRWQILSGKSRYPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGKGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKEVQQPML 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34657793 34667693 - CmPI595203_10g028110.1 Cmu10g2811 428341

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2811 913 SUPERFAMILY FYVE/PHD zinc finger 640 695 IPR011011 -
Cmu10g2811 913 SUPERFAMILY FYVE/PHD zinc finger 558 605 IPR011011 -
Cmu10g2811 913 ProSiteProfiles Zinc finger PHD-type profile. 639 700 IPR019787 -
Cmu10g2811 913 Pfam PHD-finger 563 602 IPR019787 -
Cmu10g2811 913 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 797 885 IPR016181 -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 92 124 - -
Cmu10g2811 913 ProSitePatterns Zinc finger PHD-type signature. 563 602 IPR019786 -
Cmu10g2811 913 SMART PHD_3 641 698 IPR001965 -
Cmu10g2811 913 SMART PHD_3 562 603 IPR001965 -
Cmu10g2811 913 Gene3D - 744 907 - -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 125 151 - -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 165 186 - -
Cmu10g2811 913 FunFam PHD zinc finger protein 640 700 - -
Cmu10g2811 913 PANTHER AUTOIMMUNE REGULATOR 98 910 - GO:0000977(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cmu10g2811 913 ProSiteProfiles Zinc finger PHD-type profile. 560 605 IPR019787 -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 90 151 - -
Cmu10g2811 913 FunFam PHD finger family protein 740 907 - -
Cmu10g2811 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 551 622 IPR013083 -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 242 256 - -
Cmu10g2811 913 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 700 IPR013083 -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 165 190 - -
Cmu10g2811 913 Pfam Tify domain binding domain 496 545 IPR032308 -
Cmu10g2811 913 Pfam Tify domain binding domain 329 383 IPR032308 -
Cmu10g2811 913 MobiDBLite consensus disorder prediction 228 257 - -
Cmu10g2811 913 ProSitePatterns Zinc finger PHD-type signature. 642 697 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2811 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2157 Cmu-Chr2:35162575 Cmu10g2811 Cmu-Chr10:34657793 2.40E-156 dispersed
Cmu10g2692 Cmu-Chr10:33690786 Cmu10g2811 Cmu-Chr10:34657793 3.50E-112 dispersed
Cmu10g2811 Cmu-Chr10:34657793 Cmu07g0360 Cmu-Chr7:3520970 2.90E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2811 . 91 908 PHD Transcription Factor Family AT3G53680 53.8 6.7e-251 864.0
Cmu07g0360 . 436 565 PHD Transcription Factor Family AT3G53680 54.6 1.2e-37 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40