Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2821 ATGAATTTTTCCTCCATTCCTGCTTATCTTGATCCTTCCAACTGGCAACAGCAAGTCACCCATCAAGTGGGAAGCAGTAGTAGCACTGGAGTTAGTTCTCAGCTTCTACCACCGCCGCTGCCGCCGCCTCCACCGCCTCCTCCCCCACCACCCCATGGCGTCGGCGGTGCCAGTTCGATCCGCCCTGGTTCGATGGCCGAGCGAGCTCGAATGGCTAATATTCCGATGCCCGAGGCAGCATTGAAATGCCCAAGATGTGAATCAACCAATACTAAGTTCTGTTACTTCAACAATTACAGCCTCACTCAGCCTCGCCACTTTTGCAAGACTTGTAGAAGGTACTGGACCAGGGGTGGGGCCCTACGGAACGTCCCGGTTGGGGGTGGGTGCCGGAGGAACAAAAGAAGCAAAGGGAGCAGTTCGAAGTCGCCACCGGTCAGCTCGGACCGACAACAAACCAGCGGTTCAGGCAATTCTTCATCAAGTGCAATAGCTTCCAACAACAGTGGAGGCCTTTCCCCACAGATCCCACCACTCGGCCGGTTCATGGCTCCTCTCCATCAACAGCTCAGTGACTTCGACATAGGTGGTTTCAGCTACGGGGGTGGCCTCTCAGCTGCTGCCACCGCCACCGGTGACCTGAGTTTCCAATTGGGCAACACTACTTTAGCTGGAGGAACAAGCATTGGATCTCTCTTGGGATTTGACCAACAATGGAGGCTCCAGCAACAACCTCCCCAATTTCCCTTCTTGTCCGGGTTAGACCCTTTCGACGGCGGTAGCAGTAGCGGCGGAGAAGGACCCGGACCCGGACCCGGCTGGCAAATGAGGCCAAAATTACCATCAAGTTCAAGGAATGTAAGCCAAATGGGGAATTCAGTGAAAATGGAAGAAACCCCAGATCAAGTTAATAATGCTGGAAGACAATTTCTTGGGAATGAACAATATTGGAGCAGTGGATCAATGGCATGGTCAGATCTTTCTGGTTTCAGTTCTTCATCTTCAACAAGAAACCCATTATAG 1023 52.59 MNFSSIPAYLDPSNWQQQVTHQVGSSSSTGVSSQLLPPPLPPPPPPPPPPPHGVGGASSIRPGSMAERARMANIPMPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSSSKSPPVSSDRQQTSGSGNSSSSAIASNNSGGLSPQIPPLGRFMAPLHQQLSDFDIGGFSYGGGLSAAATATGDLSFQLGNTTLAGGTSIGSLLGFDQQWRLQQQPPQFPFLSGLDPFDGGSSSGGEGPGPGPGWQMRPKLPSSSRNVSQMGNSVKMEETPDQVNNAGRQFLGNEQYWSSGSMAWSDLSGFSSSSSTRNPL 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34753018 34754487 - CmPI595203_10g028210.1 Cmu10g2821 428351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2821 340 MobiDBLite consensus disorder prediction 246 310 - -
Cmu10g2821 340 MobiDBLite consensus disorder prediction 16 34 - -
Cmu10g2821 340 MobiDBLite consensus disorder prediction 16 61 - -
Cmu10g2821 340 ProSiteProfiles Zinc finger Dof-type profile. 81 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2821 340 MobiDBLite consensus disorder prediction 122 180 - -
Cmu10g2821 340 MobiDBLite consensus disorder prediction 35 55 - -
Cmu10g2821 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 68 163 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu10g2821 340 MobiDBLite consensus disorder prediction 139 174 - -
Cmu10g2821 340 MobiDBLite consensus disorder prediction 279 310 - -
Cmu10g2821 340 Pfam Dof domain, zinc finger 80 135 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu10g2821 340 SUPERFAMILY Formin homology 2 domain (FH2 domain) 41 51 - -
Cmu10g2821 340 ProSitePatterns Zinc finger Dof-type signature. 83 119 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1633 Cmu-Chr10:15834123 Cmu10g2821 Cmu-Chr10:34753018 5.80E-28 dispersed
Cmu10g2341 Cmu-Chr10:29720011 Cmu10g2821 Cmu-Chr10:34753018 2.40E-22 dispersed
Cmu10g2557 Cmu-Chr10:32360603 Cmu10g2821 Cmu-Chr10:34753018 3.10E-26 dispersed
Cmu10g2821 Cmu-Chr10:34753018 Cmu02g2021 Cmu-Chr2:33927175 1.00E-37 wgd
Cmu10g2821 Cmu-Chr10:34753018 Cmu03g0779 Cmu-Chr3:1974577 6.60E-40 wgd
Cmu10g2821 Cmu-Chr10:34753018 Cmu04g0866 Cmu-Chr4:23198980 3.60E-38 wgd
Cmu10g2821 Cmu-Chr10:34753018 Cmu05g1021 Cmu-Chr5:9392222 1.20E-22 wgd
Cmu10g2821 Cmu-Chr10:34753018 Cmu07g0371 Cmu-Chr7:3678771 1.00E-45 wgd
Cmu10g2821 Cmu-Chr10:34753018 Cmu09g1907 Cmu-Chr9:35135199 1.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7075 PF02701 zf-Dof 3.40E-32 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2821 - - - 0.0