Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2899 ATGGAGGTCGAGAGAGAAGAAGAAGATGTGAGAGTGGGAGTGAATAGGTTCGAAGAGAGGCAGGCGATCGGGACGGCAGCTCGGAAGGACTACCGAGAGCCGCCTCCGGCGCCCCTGTTCGAGGGCGGAGAGTTAGGTTCATGGTCATTCTACAGGGCTGGGATTGCAGAGTTTGTAGGGAGTTTGTTGTTCCTTTATGTGAGTGTAACGACTGTAATGGGTGTGGCCAAAGCTCCAAATAAGTGTTCCACCGTTGGAGTCCAAGGCATTGCTTGGGCCTTTGGTGGAATCATCTTTGTTCTTGTCTATTGCACGGCTGGTATTTCAGGTGGCCACATAAACCCAGCAGTCACATTGGGGCTATTACTAGCAAGGAAGTTGTCGCTCACAAGGGCAGTTTATTACATTATAATGCAGTGCCTTGGCGCCATCTGCGGCGCCGCCGTTGTCAAAGCCTTCGAAAAAGGACCTTTCGAGCTGCTCGGCGGCGGCGCCAACACCGTTAATGAAGGCTACTCTAACACAGCTGCCCTCGGAGCTGAAATCATCGGCACATTTCTGCTTGTTTACACCGTCTTTTCAGCCACCGATGCAAAGCGAAATGCTCGAGATTCCCACGTCCCCATGTTGGCTCCTCTGCCGATTGGGTTTGCGGTGTTTTTGGTGCATTTAGCCACCATTCCGATCACCGGAACTGGCATTAATCCGGCGAGAAGCCTCGGCGCCGCCATTATTTACAACCGTCACCAAGGCTGGCATGACCATTGGGTGTTTTGGGCAGGGCCGTTCATCGGGGCAGCACTTGCAGCTTTGTACCATCAGACGGTGATCAGGGCCATCCCATTTAAGTCCAAATGA 858 52.91 MEVEREEEDVRVGVNRFEERQAIGTAARKDYREPPPAPLFEGGELGSWSFYRAGIAEFVGSLLFLYVSVTTVMGVAKAPNKCSTVGVQGIAWAFGGIIFVLVYCTAGISGGHINPAVTLGLLLARKLSLTRAVYYIIMQCLGAICGAAVVKAFEKGPFELLGGGANTVNEGYSNTAALGAEIIGTFLLVYTVFSATDAKRNARDSHVPMLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRHQGWHDHWVFWAGPFIGAALAALYHQTVIRAIPFKSK 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35357094 35359618 - CmPI595203_10g028990.1 Cmu10g2899 428429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2899 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 284 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Cmu10g2899 285 FunFam Probable aquaporin PIP1-2 37 285 - -
Cmu10g2899 285 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Cmu10g2899 285 ProSitePatterns MIP family signature. 112 120 IPR022357 -
Cmu10g2899 285 NCBIfam MIP family channel protein 56 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 Pfam Major intrinsic protein 45 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2899 285 SUPERFAMILY Aquaporin-like 47 278 IPR023271 -
Cmu10g2899 285 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0450 Cmu-Chr7:4767268 Cmu10g2899 Cmu-Chr10:35357094 2.10E-127 dispersed
Cmu07g0451 Cmu-Chr7:4774239 Cmu10g2899 Cmu-Chr10:35357094 2.10E-127 dispersed
Cmu08g0692 Cmu-Chr8:19228752 Cmu10g2899 Cmu-Chr10:35357094 2.80E-100 dispersed
Cmu10g2754 Cmu-Chr10:34169189 Cmu10g2899 Cmu-Chr10:35357094 2.30E-94 dispersed
Cmu01g2345 Cmu-Chr1:35562806 Cmu10g2899 Cmu-Chr10:35357094 9.80E-18 transposed
Cmu05g0594 Cmu-Chr5:5036320 Cmu10g2899 Cmu-Chr10:35357094 1.40E-15 transposed
Cmu05g1196 Cmu-Chr5:12081392 Cmu10g2899 Cmu-Chr10:35357094 1.80E-16 transposed
Cmu10g2899 Cmu-Chr10:35357094 Cmu07g0449 Cmu-Chr7:4760665 6.60E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2899 K09872 - vvi:100233000 474.552