Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2903 ATGATCTTGGCCTTTTCAACTATACTTTGTTCAACAGATGAATTGGATCGCTCTGCTCTACTTGACTTGAAAGGTAGAGTACTGGATGACCCACTAAAAATCATGAGTTCTTGGAATGATTCCATGCATTTCTGTGAATGGATGGGTGTTACTTGCAACTCAAGCATTAGAAGAGTAGTGGCTTTGGACTTGGAAGCTGGAGATCTAACTGGTTCTCTACCTCCTTCCTTGGGAAATCTCACTTACCTAACTAAAATCAGTTTGGGAGTCAACAAATTGTATGGCCCAATTCCCCAAGAGTTGGGTCGTTTACTTCAATTACGTTTTCTCAATTTATCCTACAATAACTTCGGCGGTGAGTTTCCAGCAAATATAAGTCATTGCAGGGAGTTGGTTGTTTTGGAGATTAGTGGCAATGAATTTGTAGGCCAAATTCCACACCAATTGTCCACATTGACCAAGTTGGAACGATTCATGTTCGGCATCAACAATCTGAGTGGAACTATTCCACCTTGGGTAGGAAATTTTTCTTCGATATTGGCTTTGTCATTTGGGCGGAACAACTTTCATGGAAGCATTCCAAGTGAAATAGGACGTCTATCTAAAATGGAATTCTTCTCAGTTATTTCAAATAAATTGACAGGTACAATGCCAATTTCAATCTACAATATCAGTTCTCTAACTCTCTTTCATTTTACTGAAAATCAATTGGAAGGAAGTCTGCCACCAAATATTGGATTTACTCTTCCCAATCTTCAGACATTTGCTGGTGGTATTAATAATTTTGATGGGCCTATTCCAAAGTCCTTGACTAATATCTCTACTCTTCAAATCTTAGATTTTCCAAATAACAATCTTGTTGGAATGATACCTGATGACATAGGGAGATTAAAACACCTTCAGCGTCTAAATTTTGGATCAAATAGTCTTGGAAGTGAAAAAATTGGTGATTTAAATTTTATTAATTCCTTGGTTAATTGTACTACGCTAAGGATTTTGGGTTTAAATACGAACCATTTTGGAGGACCATTACCTTCGTCCATTGCCAACCTTTCAAACCAGCTACAAGCTATAACCTTGGGTGATAATATGTTAAGTGGAAGCATTCCTTTAGGGATTACAAACTTGGTTAATTTGCAAGTTCTTGCAATGGAAGGCAACATGATGAACGGTAGTATCCCTCCCAATATAGGGAGCCTTAAAAATTTAGTGCTTTTGTACTTGGGTGGAAACGGATTAACTGGGCCAATCCCTTCCTCCATTGGTAACTTGACTTCACTCACCAACCTCTACTTGAGTTATAACAAACATGACGGACGTATACCAACGAGCTTAGGGGAATGCAAAACCCTCCTATCTCTTCAGCTATCTAGTAACAACCTAACCGGCTCCATACCAAAACAAATCTTTGGAATCCTTTCCCTTTCCATCACTTTGGCCTTAGATCATAACTCATTTACTGGTTCATTGCCAAATGAAGTGTGTGGGTTACTTAGTTTATTAGAACTAGATGTATCAGAAAACAAATTATCAGGTGATATTCCTAGCACCCTCGGAAAATGTACTAGCATGGAACGATTGTATCTTGGGGGAAACCAATTTAGGGGAACAATCCCTCAATCTTTAGAAACTTTAAATAGCCTTGTACAACTAAATTTATCAAGAAACAACTTGACAGGTTCGATTCCCCAATTTCTCGGTAAACTTCTTTCGCTCGTGTATCTCGATTTATCCTACAATAACTTTGTAGGAAAAATGCCAGAAGAAGGAGTTTTTTCCAACTCAACCATGTTTTCTATCCTGGGGAATAACAATTTGTGTGATGGTTTACAAGAATTACATCTACCTCCATGCACGTCTAATCAAACACATTCATCAAAGTTACTAATCCCTATAGCATCTGCAGTCGCATTTGCTGTTTTTTTGGTCAGCTTCTTTTTTGTGTGTTTTCTCCTTAACAAGTCGAGGAAGGATACTTCAACTTCATCTCCATCTTCATCGTTTGCAAAGGAGTTTCTACCACAAATTTCTTACTTGGAACTTAGTAAAGCAACCCACGGATTCTCTATGGATAATTTCATTGGTTCTGGTAGTTTTGGCACTGTGTATAAAGGTGTTCTTTCAAATGATGGATCTATTGTTGCAATTAAAGTTTTGAATCTCCAACAACAAGGTGCTTCCCAGAGTTTTGTTGATGAATGCAACACCCTCTCAAACATACGACATCGAAATCTCCTCAAGATCATAACTTCTTGCTCAAGTATTGATGCACACGGCAATGAATTTAAAGCTCTAGTTTTCAATTTTATGTCAAATGGAAATCTTGATAGTTGGCTTCATCCAACAAACCAAGGGCACAACCAAAGGAGGTTAAGTCTCATCCAAAGATTGAACATTGCCATTGATATTGCATATGGATTAGACTATCTCCATAATCATTGTGAAACTCCTATTGTTCATTGTGATTTGAAGCCTAGCAACATACTCCTTGACGAAGATATGACAGCTCATGTAGGAGACTTTGGATTAGCTAGATTCATGTTAGAAAGATCAAGTGATCAAATATCTTTTAGTCAAACCATGTCACTTGCACTCAAGGGTTCTATTGGATATATTCCACCAGAGTACGGTACGGGTAGTAGAATTTCCATCGAAGGAGATATCTTCAGCTATGGGATACTGCTACTAGAGATGATCATCGGAAAAAGACCCACCGACAACACCTTTAGCAATGATGTAGATATTCATTTGTTCACTACAAGGGCACTGTCTCAGGATGCCTTTAGCATAATCGACTCTTCAATACTATTTGAACAAACACGTCATGAAGAAGATGAGGAAGACATGGTAGAAGTAATAGCGATGAAGAGCGAAGAAGATCAAAGAGAAATGGTACCAAGATGGATGGAAGAGTGTGTAATCTCGATAATGAGAATTGGCTTGACATGCTCTTTGAAAGCACCCAGTGAGAGAACGTCAATGAATATTGTTGTTAATAATTTGCAAGCAATTAAAAGCTCCTATCTCGAATTTAAAAAGGCATAA 3045 37.96 MILAFSTILCSTDELDRSALLDLKGRVLDDPLKIMSSWNDSMHFCEWMGVTCNSSIRRVVALDLEAGDLTGSLPPSLGNLTYLTKISLGVNKLYGPIPQELGRLLQLRFLNLSYNNFGGEFPANISHCRELVVLEISGNEFVGQIPHQLSTLTKLERFMFGINNLSGTIPPWVGNFSSILALSFGRNNFHGSIPSEIGRLSKMEFFSVISNKLTGTMPISIYNISSLTLFHFTENQLEGSLPPNIGFTLPNLQTFAGGINNFDGPIPKSLTNISTLQILDFPNNNLVGMIPDDIGRLKHLQRLNFGSNSLGSEKIGDLNFINSLVNCTTLRILGLNTNHFGGPLPSSIANLSNQLQAITLGDNMLSGSIPLGITNLVNLQVLAMEGNMMNGSIPPNIGSLKNLVLLYLGGNGLTGPIPSSIGNLTSLTNLYLSYNKHDGRIPTSLGECKTLLSLQLSSNNLTGSIPKQIFGILSLSITLALDHNSFTGSLPNEVCGLLSLLELDVSENKLSGDIPSTLGKCTSMERLYLGGNQFRGTIPQSLETLNSLVQLNLSRNNLTGSIPQFLGKLLSLVYLDLSYNNFVGKMPEEGVFSNSTMFSILGNNNLCDGLQELHLPPCTSNQTHSSKLLIPIASAVAFAVFLVSFFFVCFLLNKSRKDTSTSSPSSSFAKEFLPQISYLELSKATHGFSMDNFIGSGSFGTVYKGVLSNDGSIVAIKVLNLQQQGASQSFVDECNTLSNIRHRNLLKIITSCSSIDAHGNEFKALVFNFMSNGNLDSWLHPTNQGHNQRRLSLIQRLNIAIDIAYGLDYLHNHCETPIVHCDLKPSNILLDEDMTAHVGDFGLARFMLERSSDQISFSQTMSLALKGSIGYIPPEYGTGSRISIEGDIFSYGILLLEMIIGKRPTDNTFSNDVDIHLFTTRALSQDAFSIIDSSILFEQTRHEEDEEDMVEVIAMKSEEDQREMVPRWMEECVISIMRIGLTCSLKAPSERTSMNIVVNNLQAIKSSYLEFKKA 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35413788 35416931 + CmPI595203_10g029030.1 Cmu10g2903 428433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2903 1014 Gene3D Ribonuclease Inhibitor 318 621 IPR032675 -
Cmu10g2903 1014 Gene3D Ribonuclease Inhibitor 164 254 IPR032675 -
Cmu10g2903 1014 Gene3D Ribonuclease Inhibitor 13 163 IPR032675 -
Cmu10g2903 1014 SMART LRR_typ_2 497 521 IPR003591 -
Cmu10g2903 1014 SMART LRR_typ_2 400 424 IPR003591 -
Cmu10g2903 1014 SMART LRR_typ_2 104 128 IPR003591 -
Cmu10g2903 1014 SMART LRR_typ_2 545 568 IPR003591 -
Cmu10g2903 1014 SMART LRR_typ_2 569 594 IPR003591 -
Cmu10g2903 1014 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524(InterPro)
Cmu10g2903 1014 Pfam Leucine Rich Repeat 106 128 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 Pfam Leucine Rich Repeat 402 424 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 Pfam Leucine Rich Repeat 499 521 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 770 1014 - -
Cmu10g2903 1014 Gene3D Transferase(Phosphotransferase) domain 1 770 1013 - -
Cmu10g2903 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 659 769 - -
Cmu10g2903 1014 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515(InterPro)
Cmu10g2903 1014 Gene3D Phosphorylase Kinase; domain 1 650 769 - -
Cmu10g2903 1014 Pfam Protein kinase domain 691 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2903 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2903 1014 SMART serkin_6 688 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2903 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 319 624 - -
Cmu10g2903 1014 SUPERFAMILY L domain-like 10 308 - -
Cmu10g2903 1014 Pfam Leucine rich repeat N-terminal domain 16 53 IPR013210 -
Cmu10g2903 1014 SUPERFAMILY L domain-like 354 608 - -
Cmu10g2903 1014 PANTHER OS04G0122200 PROTEIN 29 1004 IPR051809 -
Cmu10g2903 1014 Gene3D Ribonuclease Inhibitor 255 317 IPR032675 -
Cmu10g2903 1014 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 53 318 - -
Cmu10g2903 1014 ProSiteProfiles Protein kinase domain profile. 688 1009 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2903 1014 SUPERFAMILY Protein kinase-like (PK-like) 661 1001 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1162 Cmu-Chr1:20885071 Cmu10g2903 Cmu-Chr10:35413788 1.40E-173 dispersed
Cmu03g1348 Cmu-Chr3:8601514 Cmu10g2903 Cmu-Chr10:35413788 1.00E-73 dispersed
Cmu06g1315 Cmu-Chr6:24294530 Cmu10g2903 Cmu-Chr10:35413788 7.90E-70 dispersed
Cmu06g1316 Cmu-Chr6:24312222 Cmu10g2903 Cmu-Chr10:35413788 2.40E-66 dispersed
Cmu10g2903 Cmu-Chr10:35413788 Cmu11g0626 Cmu-Chr11:6846403 4.10E-98 dispersed
Cmu10g2902 Cmu-Chr10:35400478 Cmu10g2903 Cmu-Chr10:35413788 1.10E-235 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75886 PF00069 Pkinase 4.50E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2903 - - - 0.0