Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2907 ATGGCCGCCACCGCATCCTCCTTCATTGGAACTCGTCTTCCTATTGCCCCATCCGGGTCGGGTCGGGTACACGCCAGATTCTCATTCGGCAAACCAAAAAGCGCACCGAAGAAATCGTCAAAAAAGCCCACTTCGGACCGGCCGCTGTGGTACCCGGGGGCCGTGGCGCCGGAGTGGCTGGACGGAAGCTTGGTGGGGGATTACGGGTTCGACCCGTTTGGGCTGGGAAAACCGGCGGAGTACTTGCAGTTCGACTTGGACTCATTGGACCAGAACTTGGCTAAGAATGTGGCTGGTGATGTGATCGGTACTCGGTTCGAGAATGCGGATGTGAAATCGACGCCGTTCCAGCCGTACAGTGAGGTGTTTGGGTTGCAGAGGTTTCGCGAGTGTGAGCTGATCCATGGAAGGTGGGCTATGTTGGCTACACTCGGTGCCCTTACTGTTGAGTGGCTCACTGGTGTCACTTGGCAAGATGCCGGAAAGGTAGAGCTGGTGGAAGGATCCTCATATCTTGGGCAGCCACTTCCATTCTCCATATCAACATTGATATGGATAGAGGTTCTAGTAATTGGGTACATTGAGTTTCAAAGGAATGCTGAGCTTGATCCAGAGAAGAGACTTTACCCTGGGGGCAAGTACTTTGATCCCCTTGGCTTAGCGGCCGACCCCGAGAAGAAGGCGACGCTTCAATTGGCCGAGATTAAGCACGCTCGCCTCGCCATGGTCGCGTTCCTCGGTTTTGCTGTTCAAGCTGCTGCCACTGGCAAAGGCCCCCTCAATAACTGGGCAACCCATCTGATCTTCAATTGTTCCGACGCCGTTAAGGAAGAATTCCTCAGGCATTTGGCTCCTCACCGGAAGCTTGCGTTCCTGACCTTCTACTTCACACTTGATATGCATCCATTTGGGGTTACGGTTTCGGATCGTTATGCGAGTGTTGTTCCTATCCGAGGTGCTTCAATGTCTCCCACTTTTAATCCTAGAGCGACTTCTCTGGCAGGACCAGTAACTGGTGACTACGTGCTGGTTGAGAAATTTTGCCTTCAGAAGTATAAATTTTCTCCCGGTGACGTGATTGTTTACCGCTCCCCTTGTAATTACAAGGAGAAACATGTGAAAAGAATTATTGCCTTACCAGGAGATTGGGTTGGAACTCGTCAAACATATGATGTTGTCAAGGTTCCAGAAGGACATTGTTGGGTTGAAGGTGACAATGCAGAATGCAGCATGGACTCGAGATCTTTTGGCCCGATACCAATGGGTTTGATTCAAGGGAGGGTGTCGCATATCGTATGGCCACCTCAAAGAATTGGTGCTGTTGAGAAAAAATATCCTCAGGGAAGAATCAAGTCCAACTAA 1362 50.95 MAATASSFIGTRLPIAPSGSGRVHARFSFGKPKSAPKKSSKKPTSDRPLWYPGAVAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNVAGDVIGTRFENADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLIFNCSDAVKEEFLRHLAPHRKLAFLTFYFTLDMHPFGVTVSDRYASVVPIRGASMSPTFNPRATSLAGPVTGDYVLVEKFCLQKYKFSPGDVIVYRSPCNYKEKHVKRIIALPGDWVGTRQTYDVVKVPEGHCWVEGDNAECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGRIKSN 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35434154 35440123 - CmPI595203_10g029070.1 Cmu10g2907 428437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2907 453 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cmu10g2907 453 Pfam Chlorophyll A-B binding protein 56 252 IPR022796 -
Cmu10g2907 453 SUPERFAMILY Chlorophyll a-b binding protein 43 267 - -
Cmu10g2907 453 CDD S26_SPase_I 313 428 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cmu10g2907 453 Pfam Signal peptidase, peptidase S26 393 433 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cmu10g2907 453 Pfam Signal peptidase, peptidase S26 311 387 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cmu10g2907 453 FunFam Mitochondrial inner membrane protease subunit 308 446 - -
Cmu10g2907 453 FunFam Chlorophyll a-b binding protein, chloroplastic 103 281 - -
Cmu10g2907 453 SUPERFAMILY LexA/Signal peptidase 313 441 IPR036286 -
Cmu10g2907 453 Gene3D Umud Fragment, subunit A 310 447 - -
Cmu10g2907 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 395 414 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cmu10g2907 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 310 326 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cmu10g2907 453 PRINTS Bacterial leader peptidase 1 (S26A) family signature 372 384 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cmu10g2907 453 MobiDBLite consensus disorder prediction 19 49 - -
Cmu10g2907 453 Gene3D Chlorophyll a/b binding protein domain 51 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1027 Cmu-Chr7:25012635 Cmu10g2907 Cmu-Chr10:35434154 3.60E-23 dispersed
Cmu10g2907 Cmu-Chr10:35434154 Cmu11g1374 Cmu-Chr11:25880952 1.00E-27 dispersed
Cmu10g2907 Cmu-Chr10:35434154 Cmu04g0760 Cmu-Chr4:22113993 2.20E-123 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2907 K08915 - rcu:8267514 474.937