Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2909 ATGCCTGATTTTTTCCTGGTTGGGTTCGTACCGTACTGTGTGTTGCAGTTGCAGCAGAACATGGATTTTGAACAAGGAACGTCGATCTTGCAAAACGGCGTCGTCAAGGGTTCGCTGAGGCACGCTCGAACGGCCCACAACATGTCGTCGTCATCGCTTCGTAAAAAGTCCGATTTGACCCTCGTCTCCAAGGTTCGTTTGGGTTGCCTCAGGCAGTTGCTTGTGAATCTTCAGGAGGTCGTTTTTGGAACCAGGATTTGGATTCTTTTTCCGGCGGTGCCGTTGGCTGTTTTGGCCGACTCTTTCGGCTTCGCAAGACCATGGGTTTTCGTTCTTAGCTTGCTGGGCCTTGCTCCACTCGCTGAACGCCTTAGCTTTCTGACCGAACAAATCTCACACTTCACCGGCCATACAGTTGGTGGGTTGCTAAATGCGACATGTGGGAATGCGACGGAGCTAATCGTAGCAGTTTTTGCACTTAGCAAGGATAAGATTAAGTTGGTGAAGTATTCTCTTTTGGGATCCGTTCTTTCAAACCTTCTTCTTGTTCTTGGAACCCCACTCTTCCTTGGTGGCATCGTCAATCTTAACAAAGAACAAACCTACGACCGAAGGCAAGCTGAGGTGAACTCGCACATGTTGTTGTTGGCGCTTTTGTGCTATTCCCTCCCGATGTTGTTCCCTTACGCTGGAGAATCGGCTGACGTGGGGGGAGGAGCTGGTTCCCTGCGATTGTCTAGAGCCGGTAGTATAGTAATGCTGGTGGCTTATGTCGCTTACTTGATCTTTCACCTCTGGACTCATCGCCAATTATTTGAAGCAGACAAGGAACTGGACGTATACGACGACGTAGTGGAAGAAGGTCCGGTGATTGGAAAATGGAGCGCAATAGCGTGGTTGGTGGTTGTTACCCTTCTCATTGCTTTGTTATCTGAGTACGTGGTCGCCACAATTGAGGATGCATCAGAAACTTGGGGCTTATCTGTTGCATTCCTTGGCATAATCTTGCTACCACTCGTTGGAAATGCAGCTGAGCATGCAGGAGCTGTCATTTTTGCTTACAAGAACAAGTTGGATATAACTTTAGGCGTTGCTTTAGGATCTGCAACTCAAATAGCAATGTTTGTGGTTCCTTTATGTGTAATTGTTGCTTGGGTTTTGGGAATGAATATGGATCTAAATTTTAATATCCTCGAAACTGCTTCCCTTGCTCTTTCAATATTGGCTTCATCATCCATTTTACAGGATGGTACTTCTCACTACATGAAGGGATTGATTCTCCTCCTCTTCTATCTTGTCATTGCAACATGTTTCTTCCTAATTAATGTCGACGATTTCGGATTCAGATTTGTACGCTTTGTTCAACGTATTTGCTTCATTCCTTTGGTCTTTGGTTGGTGGTTACTCTGGCTTTCTTGCATATCTCCCTGCCTTGTAAGCAATTCAGACTCAGTTCGGTTCGGGACTATGCGGGAAGAAAAGAAGCCAGTAATTGTATGGCGGAATATCGGAAAGCTTGAAGCCTCTGATCGTCGAGTCTTCAACACCACGGACTGTGAACCACTGTGGAATAGCAACAAGCAATTTGGCACCAGTGGTGGTAGTGATAATGATGGTGATGGAACTAGCTGTAAATTTGCCTGCATTACTGTCGTAGAAAAGCGAAACCGGAAGGAATTCCTGCCGACGTTCGCTCAGTTGCTTAAGCATCCATTATCAATTCTGGCTTTGGTGCACAGAGAAGCAACGCTCTTCGCTGCTGGCGCCGTATCGGGGGCGGCCGCGAAGACTGCGACAGCTCCGCTTGAGCGAATCAAGCTTATTATGCAGACTCATGGAGCAAGAATTGCGCAAGAAGGAGCTAAGAAGTCTATTGGCTTTATCGAGGCAATAAAAACAGTAATAAAGGTGGAAGGAGTTAAAGGACTTTGGAAAGGCAACTTTCCTCAGGTTATACGTATCATACCATATAGTGCTATCCAGCTCTTTGCCTATGAAAATTTCAAGAACCTTTTCAGGGGAGAAGATGGAGAACTTTCTGTGATTGGAAGACTCGCTGCTGGTGCATGCGCTGGCATGACATCCACCTTTATGACATATCCATTAGATGTTTTGAGGTTGCGTATGGCAGTTGACCCTGGGTTTCGAACGGCATCTGAGATTGCCTTAAGTATGCTACGAGAGGAAGGCATTACATCTTACTACAGTGGTCTTGGACCATCCCTTTTTGGCATAGCTCCTTACATTGCCGTGAACTTTTGCATTTTTGACTTGGTAAAAAAGTCTTTGCCAGAGGAAGCTCAAAGGAGAACTGAAACATCTTTATTCACAGCCTTGCTTTCGGCTTCCCTAGCTACACTCATGTGCTATCCTTTGGACACTGTGAGAAGACAGATGCAAATGAAGGGTACACCTTACAATACAGTTTTCGATGCTTTTGCAGGTATATGGGCTGGTGATGGATTTGTTGGATTCTACAGGGGCTTGCTGCCCAACTTCTTGAAGAATTTACCAAGCAGCAGCATCAAGCTTACCACATATGACTTTGTCAAGCGTCTTATTGAAACTAGTGAAAATGAGTACCAGAGAATCATTGAGGAAAATCGCGAAAAGCTTAACCAAAAGTTCACTGATTAA 2637 45.54 MPDFFLVGFVPYCVLQLQQNMDFEQGTSILQNGVVKGSLRHARTAHNMSSSSLRKKSDLTLVSKVRLGCLRQLLVNLQEVVFGTRIWILFPAVPLAVLADSFGFARPWVFVLSLLGLAPLAERLSFLTEQISHFTGHTVGGLLNATCGNATELIVAVFALSKDKIKLVKYSLLGSVLSNLLLVLGTPLFLGGIVNLNKEQTYDRRQAEVNSHMLLLALLCYSLPMLFPYAGESADVGGGAGSLRLSRAGSIVMLVAYVAYLIFHLWTHRQLFEADKELDVYDDVVEEGPVIGKWSAIAWLVVVTLLIALLSEYVVATIEDASETWGLSVAFLGIILLPLVGNAAEHAGAVIFAYKNKLDITLGVALGSATQIAMFVVPLCVIVAWVLGMNMDLNFNILETASLALSILASSSILQDGTSHYMKGLILLLFYLVIATCFFLINVDDFGFRFVRFVQRICFIPLVFGWWLLWLSCISPCLVSNSDSVRFGTMREEKKPVIVWRNIGKLEASDRRVFNTTDCEPLWNSNKQFGTSGGSDNDGDGTSCKFACITVVEKRNRKEFLPTFAQLLKHPLSILALVHREATLFAAGAVSGAAAKTATAPLERIKLIMQTHGARIAQEGAKKSIGFIEAIKTVIKVEGVKGLWKGNFPQVIRIIPYSAIQLFAYENFKNLFRGEDGELSVIGRLAAGACAGMTSTFMTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFGIAPYIAVNFCIFDLVKKSLPEEAQRRTETSLFTALLSASLATLMCYPLDTVRRQMQMKGTPYNTVFDAFAGIWAGDGFVGFYRGLLPNFLKNLPSSSIKLTTYDFVKRLIETSENEYQRIIEENREKLNQKFTD 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35452782 35466458 - CmPI595203_10g029090.1 Cmu10g2909 428439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2909 878 Gene3D Mitochondrial carrier domain 579 858 IPR023395 -
Cmu10g2909 878 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 441 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cmu10g2909 878 FunFam Envelope ADP,ATP carrier protein 581 859 - -
Cmu10g2909 878 SUPERFAMILY Mitochondrial carrier 583 850 IPR023395 -
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 646 666 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 597 611 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 584 597 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 735 753 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 778 800 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 PRINTS Mitochondrial carrier protein signature 694 712 IPR002067 GO:0055085(InterPro)
Cmu10g2909 878 ProSiteProfiles Solute carrier (Solcar) repeat profile. 679 762 IPR018108 -
Cmu10g2909 878 Gene3D - 135 277 IPR044880 -
Cmu10g2909 878 Gene3D - 280 440 IPR044880 -
Cmu10g2909 878 ProSiteProfiles Solute carrier (Solcar) repeat profile. 769 853 IPR018108 -
Cmu10g2909 878 Pfam Mitochondrial carrier protein 774 856 IPR018108 -
Cmu10g2909 878 Pfam Mitochondrial carrier protein 678 765 IPR018108 -
Cmu10g2909 878 Pfam Mitochondrial carrier protein 584 674 IPR018108 -
Cmu10g2909 878 NCBIfam calcium/proton exchanger 91 439 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cmu10g2909 878 Coils Coil 847 874 - -
Cmu10g2909 878 Pfam Sodium/calcium exchanger protein 108 265 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2909 878 Pfam Sodium/calcium exchanger protein 296 438 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu10g2909 878 ProSiteProfiles Solute carrier (Solcar) repeat profile. 579 671 IPR018108 -
Cmu10g2909 878 FunFam Vacuolar cation/proton exchanger 284 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0403 Cmu-Chr7:4180203 Cmu10g2909 Cmu-Chr10:35452782 1.80E-37 dispersed
Cmu08g1647 Cmu-Chr8:28121491 Cmu10g2909 Cmu-Chr10:35452782 2.50E-39 dispersed
Cmu09g0617 Cmu-Chr9:5644899 Cmu10g2909 Cmu-Chr10:35452782 6.70E-15 dispersed
Cmu10g1232 Cmu-Chr10:5181265 Cmu10g2909 Cmu-Chr10:35452782 3.30E-92 dispersed
Cmu10g2909 Cmu-Chr10:35452782 Cmu10g2930 Cmu-Chr10:35637679 2.50E-14 dispersed
Cmu01g1932 Cmu-Chr1:32681236 Cmu10g2909 Cmu-Chr10:35452782 3.50E-20 transposed
Cmu04g0750 Cmu-Chr4:22006324 Cmu10g2909 Cmu-Chr10:35452782 1.20E-144 transposed
Cmu04g1195 Cmu-Chr4:26513961 Cmu10g2909 Cmu-Chr10:35452782 1.00E-26 transposed
Cmu10g2909 Cmu-Chr10:35452782 Cmu03g0699 Cmu-Chr3:1207958 1.40E-118 wgd
Cmu10g2909 Cmu-Chr10:35452782 Cmu04g0749 Cmu-Chr4:21996549 1.70E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2909 K07300 - csv:101213421 668.307