Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu10g2914 | ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCATGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCGAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG | 726 | 45.73 | MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIEQYKCPSCSMKKGRQ | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 35499727 | 35502021 | + | CmPI595203_10g029140.1 | Cmu10g2914 | 428444 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu10g2914 | 241 | FunFam | PHD finger alfin-like protein | 180 | 236 | - | - | |
Cmu10g2914 | 241 | MobiDBLite | consensus disorder prediction | 164 | 178 | - | - | |
Cmu10g2914 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 177 | 239 | IPR011011 | - | |
Cmu10g2914 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
Cmu10g2914 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 235 | IPR013083 | - | |
Cmu10g2914 | 241 | Pfam | Alfin | 11 | 136 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cmu10g2914 | 241 | MobiDBLite | consensus disorder prediction | 136 | 178 | - | - | |
Cmu10g2914 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - | |
Cmu10g2914 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - | |
Cmu10g2914 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
Cmu10g2914 | 241 | PANTHER | CPG BINDING PROTEIN | 8 | 240 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cmu10g2914 | 241 | MobiDBLite | consensus disorder prediction | 147 | 163 | - | - | |
Cmu10g2914 | 241 | Pfam | PHD-finger | 188 | 234 | IPR019787 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu10g1556 | Cmu-Chr10:11312678 | Cmu10g2914 | Cmu-Chr10:35499727 | 1.30E-80 | dispersed | |
Cmu10g2914 | Cmu-Chr10:35499727 | Cmu11g0156 | Cmu-Chr11:2049808 | 4.70E-85 | dispersed | |
Cmu10g2914 | Cmu-Chr10:35499727 | Cmu07g0469 | Cmu-Chr7:5108526 | 2.40E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7081 | PF12165 | Alfin | 6.30E-67 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu10g2914 | K26274 | - | csv:101211970 | 462.996 |