Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2914 ATGGAAGAAATTCCCTCCACCACTCCCAAAACCGTCGAAGAAATTTTCAAAGATTACTCCGCTCGCCGTGCCGCTCTTGTTCGCGCCCTCGCTCATGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATAAGGAAAATTTGTGTCTGTATGGACATCCTAATGAAACTTGGGAAGTGGTTCTTCCAGTAGAAGAAGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATCAATTTTGCAAGAGATGGTATGAACAGAAAAGATTGGCTATCTCTTGTTGCTGTTCATAGTGATTCCTGGTTGCTCTCTGTGGCTTTCTATCTTGGAGCAAGGCTGAACCGAAACGAAAGAAAGCGTTTATTTAGCTTGATGAATGATCTTCCCACTGTCTTTGAAGTTGTGACAGACCGGAAGCCTGCCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGATCACAAGGAAGCGCTAAGAGATCCAATGATGGGCAGGTGAAAAGCAACCCTAAACATGCCGAACACAGTTGTGAGGAGGATGTCGATGAACATAGTGAAACCCTCTGTGGTAGCTGTGGTGAAAATTACAGTGCAGATGAGTTTTGGATTGGCTGTGACATCTGTGAAAGGTGGTACCACGGAAAGTGCGTAAGGATAACACCTGCCAAGGCTGATAGTATCGAACAATATAAATGTCCTTCTTGCAGCATGAAGAAGGGCAGACAGTAG 726 45.73 MEEIPSTTPKTVEEIFKDYSARRAALVRALAHDVDEFYGLCDPDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTDRKPAKEKPSVDSGSRSQGSAKRSNDGQVKSNPKHAEHSCEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVRITPAKADSIEQYKCPSCSMKKGRQ 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35499727 35502021 + CmPI595203_10g029140.1 Cmu10g2914 428444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2914 241 FunFam PHD finger alfin-like protein 180 236 - -
Cmu10g2914 241 MobiDBLite consensus disorder prediction 164 178 - -
Cmu10g2914 241 SUPERFAMILY FYVE/PHD zinc finger 177 239 IPR011011 -
Cmu10g2914 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cmu10g2914 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 235 IPR013083 -
Cmu10g2914 241 Pfam Alfin 11 136 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu10g2914 241 MobiDBLite consensus disorder prediction 136 178 - -
Cmu10g2914 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cmu10g2914 241 SMART PHD_3 187 235 IPR001965 -
Cmu10g2914 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cmu10g2914 241 PANTHER CPG BINDING PROTEIN 8 240 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu10g2914 241 MobiDBLite consensus disorder prediction 147 163 - -
Cmu10g2914 241 Pfam PHD-finger 188 234 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g1556 Cmu-Chr10:11312678 Cmu10g2914 Cmu-Chr10:35499727 1.30E-80 dispersed
Cmu10g2914 Cmu-Chr10:35499727 Cmu11g0156 Cmu-Chr11:2049808 4.70E-85 dispersed
Cmu10g2914 Cmu-Chr10:35499727 Cmu07g0469 Cmu-Chr7:5108526 2.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7081 PF12165 Alfin 6.30E-67 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2914 K26274 - csv:101211970 462.996