Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2944 ATGGGAAAAAGCCACAACCCTCTGAGTGAATTTCAGGTGCACCCACTTCAGTTCATGCAGATTCTTGCACCGAAAACAGCTGATTGGTGCTCCAAATCACCAAATACGAACAGAAAATTCAAGAATCAACAATGGAAAAGCTGTTCTTCATACCTCATTGCTCTCTTTTTTGCTCATCTTTTGGCTGTTTCCCTTCGACCAGTCACTGGCCAGATGTGGGATGGAGTGGCTGTTACACAAGGAGATTTTCAAGCTCTTCAAGCTATAAAGCACGAACTCATCGATCTAAAAGGAGCTTTGCATGGCTGGAATGGCAGCAATGGAGCTTGTTCCGGACAGTGGGCAGGAATCAAGTGTGTGAAGGGCCAGGTTATCGCTATACAGCTTCCATGGAAGGCTCTTGCTGGCCGGATTTCCGACAGGATTGGACAGCTCCGGGAACTTCGGAAACTCAGCCTCCATGACAACATGATCTCCGGTGCGGTCCCTCGGTCCCTGGGGTTCCTTCCAAATCTCAGAGGAGTTTATCTTTTCAACAACAGATTATCAGGTTCTATTCCTCCTACAATTGGTAACCTTCCCCTTCTTCAAACTCTTGATTTGAGCAACAATTTACTCACTGGAGAAATTCCTTCTGGTCTAGCAAATTCTACCAAATTGCTTAGAGTTAATCTGAGTTACAATTCACTGTCGGGATCTATCCCAAGTAGTTTTACACAGTCGTTTTCTCTTATAATTCTTGCTCTTCAGCACAATAATATTTCTGGGACCGTCCCAGACTCTTGGGGAGGTCTTGGAAATAGAACTTGCCCACTTGGGGTTTTAACACTTGATCATAATGCTATATATGGAGCCATTCCAGCTTCTTTGAGTAAGTTGGAATGGCTTCAAGAGATTTCCATCGGGGACAATAAGATCTCTGGGGCTATACCAAGTGAGATAGGCAGGCTGAAGAGACTTCGTCTTCTGGATTTGTCAAACAACGCCATTAGTGGCGGCTTCCCTTCAAGTTTCTCCAATCTCTCCTCTCTTGAGTCATTGAATGTTGAAAATAATCGCCTTGAAAGCCAGATTCCAGGAGATATTGATAGATTGCAGAATCTCTCAGTGGTCAAGCTTGGGAAGAATCGTTTTAGTGGTGAAATTCCTGCAAGTTTTGGGAACATTTCTGGTATTGACCAACTTGATTTCTCAGAAAATAACTTCACGGGACAGATTCCAACATCATTGACCCGTTTGTTGAATCTAACCTCTTTCAATGTCTCCTACAACAATCTCTCTGGCCCTGTTCCAGTTCTCCTATCGAATAAGTTCAACGTGAGCTCTTTCTTAGGGAACCTTCAACTGTGTGGTTTTAGTACTTCAACTCCATGCCTACCTGCATCCTCCCCACATAATATTACAACTCCATCAACTGAGGTACTGAAACCGCATCGCCACCGCAGACTTAGTCTGAAGGACATAATTCTGATAGCTGCTGGAGCTCTGTTGGTGCTTCTTCTTCTTCTCTGCTCAATTTTGCTCTGTTGTTTGTTATCAAAAAGAGCTGCTGCCAGAAAGAATGACAAAACAGCTGCCAAGGAAACTGCTGCGAGAAGCATCGAGAAGGCAGCACCAGGCAGCACCGATGTTGGGGCAGGTGAAGCTGGTGGAAAACTAGTTCATTTTGATGGGCCATTTGTTTTCACTGCAGATGACCTTTTGTGTGCGACTGCGGAGATCATGGGCAAAAGCACATATGGAACAGCATATAAAGCAACATTAGAAGATGGAAATGAAGTTGCGGTGAAAAGATTGAGGGAAAAGACAACAAAAGGGCAGAAAGAATTTGAAGCCGAAGTTGCAGCACTCGGAAAGATTAGACATCCGAATCTACTTGCTCTTAGAGCTTACTACTTAGGCCCCAAAGGAGAGAAGCTCCTTGTCTTTGATTACATGCCCAGAGGAAGTCTCTCTTCCTTCCTTCATGCTCGCGGACCGGAAACCACAGTTGATTGGCCAACGAGGATGAAAATAGCGATCGGAATCACGCAAGGCTTGAACTACCTCCACACAGAGGAGAATCTAATTCATGGAAACCTCACGTCCAGCAACATTCTGCTGGACGATCAGACCAATGCTCGTATTGCAGATTTTGGGCTTCCTAAGCTCATGACTTCAGCTGCAGCCACAAATGTGATTGCCACTGCAGGATCACAGGGCTACAATGCACCAGAGCTAACAAAAACCAAAAAAACCACATCAAAGACAGATGTTTACAGCCTTGGAGTCATAATCTTGGAACTTTTGACAGGAAAGTCTCCTGGAGAACCCATGGATGGAATGGATTTACCTCAGTGGGTGGCCTCAATTGTAAAGGAAGAGTGGACAAATGAAGTGTTTGATTTGGAGCTTATGAAAGATACCCAAAATATTGGTGATGAACTGTTGAACACTTTAAAACTAGCCCTGCATTGTGTTGATCCATCACCAGCTGCTCGGCCAGATGTTCAGCAAATTCTCCAGCAACTGGAGGAAATTAATGCTTCTACTTCCGGTGACGATGGTTTCAAAAACCAACCAGCAAATGAATAG 2574 44.48 MGKSHNPLSEFQVHPLQFMQILAPKTADWCSKSPNTNRKFKNQQWKSCSSYLIALFFAHLLAVSLRPVTGQMWDGVAVTQGDFQALQAIKHELIDLKGALHGWNGSNGACSGQWAGIKCVKGQVIAIQLPWKALAGRISDRIGQLRELRKLSLHDNMISGAVPRSLGFLPNLRGVYLFNNRLSGSIPPTIGNLPLLQTLDLSNNLLTGEIPSGLANSTKLLRVNLSYNSLSGSIPSSFTQSFSLIILALQHNNISGTVPDSWGGLGNRTCPLGVLTLDHNAIYGAIPASLSKLEWLQEISIGDNKISGAIPSEIGRLKRLRLLDLSNNAISGGFPSSFSNLSSLESLNVENNRLESQIPGDIDRLQNLSVVKLGKNRFSGEIPASFGNISGIDQLDFSENNFTGQIPTSLTRLLNLTSFNVSYNNLSGPVPVLLSNKFNVSSFLGNLQLCGFSTSTPCLPASSPHNITTPSTEVLKPHRHRRLSLKDIILIAAGALLVLLLLLCSILLCCLLSKRAAARKNDKTAAKETAARSIEKAAPGSTDVGAGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGQKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMPRGSLSSFLHARGPETTVDWPTRMKIAIGITQGLNYLHTEENLIHGNLTSSNILLDDQTNARIADFGLPKLMTSAAATNVIATAGSQGYNAPELTKTKKTTSKTDVYSLGVIILELLTGKSPGEPMDGMDLPQWVASIVKEEWTNEVFDLELMKDTQNIGDELLNTLKLALHCVDPSPAARPDVQQILQQLEEINASTSGDDGFKNQPANE 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35730262 35733027 - CmPI595203_10g029440.1 Cmu10g2944 428474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2944 857 FunFam Leucine-rich repeat receptor-like kinase 82 188 - -
Cmu10g2944 857 FunFam Pollen receptor-like kinase 1 646 851 - -
Cmu10g2944 857 Pfam Leucine rich repeat N-terminal domain 81 119 IPR013210 -
Cmu10g2944 857 CDD STKc_IRAK 575 840 - -
Cmu10g2944 857 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 272 338 - -
Cmu10g2944 857 ProSiteProfiles Protein kinase domain profile. 569 840 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2944 857 Pfam Leucine rich repeat 319 378 IPR001611 GO:0005515(InterPro)
Cmu10g2944 857 Pfam Protein tyrosine and serine/threonine kinase 573 837 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2944 857 PRINTS Leucine-rich repeat signature 196 209 - -
Cmu10g2944 857 PRINTS Leucine-rich repeat signature 317 330 - -
Cmu10g2944 857 Gene3D Transferase(Phosphotransferase) domain 1 647 853 - -
Cmu10g2944 857 Gene3D Ribonuclease Inhibitor 81 190 IPR032675 -
Cmu10g2944 857 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 271 - -
Cmu10g2944 857 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Cmu10g2944 857 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Cmu10g2944 857 Pfam Leucine Rich Repeat 220 239 IPR001611 GO:0005515(InterPro)
Cmu10g2944 857 Pfam Leucine Rich Repeat 415 436 IPR001611 GO:0005515(InterPro)
Cmu10g2944 857 SUPERFAMILY Protein kinase-like (PK-like) 573 841 IPR011009 -
Cmu10g2944 857 Gene3D Ribonuclease Inhibitor 191 276 IPR032675 -
Cmu10g2944 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 284 845 IPR052451 -
Cmu10g2944 857 SUPERFAMILY L domain-like 115 461 - -
Cmu10g2944 857 FunFam Leucine-rich repeat receptor-like protein kinase 555 645 - -
Cmu10g2944 857 Pfam Leucine Rich repeats (2 copies) 170 207 IPR025875 -
Cmu10g2944 857 Gene3D Ribonuclease Inhibitor 277 462 IPR032675 -
Cmu10g2944 857 SMART LRR_typ_2 413 436 IPR003591 -
Cmu10g2944 857 SMART LRR_typ_2 145 168 IPR003591 -
Cmu10g2944 857 SMART LRR_typ_2 341 365 IPR003591 -
Cmu10g2944 857 SMART LRR_typ_2 317 340 IPR003591 -
Cmu10g2944 857 SMART LRR_typ_2 169 192 IPR003591 -
Cmu10g2944 857 SMART LRR_typ_2 193 217 IPR003591 -
Cmu10g2944 857 Gene3D Phosphorylase Kinase; domain 1 575 646 - -
Cmu10g2944 857 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 339 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1220 Cmu-Chr3:6718689 Cmu10g2944 Cmu-Chr10:35730262 7.30E-56 dispersed
Cmu03g2017 Cmu-Chr3:28520358 Cmu10g2944 Cmu-Chr10:35730262 6.70E-56 dispersed
Cmu09g0886 Cmu-Chr9:8665146 Cmu10g2944 Cmu-Chr10:35730262 6.80E-68 dispersed
Cmu10g2944 Cmu-Chr10:35730262 Cmu11g0257 Cmu-Chr11:3111452 3.90E-73 dispersed
Cmu10g2944 Cmu-Chr10:35730262 Cmu07g0522 Cmu-Chr7:6085620 4.80E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75891 PF07714 PK_Tyr_Ser-Thr 1.50E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2944 - - - 0.0