Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2952 ATGAATAACATAAATCAAACGATAAATACACTCGCTGGCGGATCTTCTGACAACAGAACCAATAATTTCGGTATGGAAGTTCCGAAATTCAAGTCTCTTCAACCTCCTCCATTTCCCATGTCTCCTTCTTCTTACCTTTCAGCTTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTAAATTCCCCTCTCCTTTTCTCATTTGGTGTTTTTCCTTCTCCTACTTCTGGTGCCTTAAATTTGAGAAATGATTATGAGGAGGGTGAGCAGCAAGAAATGAAGGCAGATGTGAAAAATTACTCTGCTTCTTCGTTTAACCCACAAACAGGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACACCACTGAATCCGAACGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCAGAATTTGTTACTACAGAAATGGCGGCAGCTGAATCAAAGCCAATTTCTCAGCTACCAATTTACAACAGAGAACAGAAAAAATCAGAGAACGATGGATATAACTGGAGAAAATACGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGCTATTACAAGTGCACTTTCCCAAGTTGCCCAACAAAGAAGAAAGTTGAAAGATCTTTAGACGGCCAAATTACTGAGATTGTTTATAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCGATTTACGATCCATCTTCGGCGGATTCCGCCCTGCTGCAGGAGGATTCCTCCGTCTCGGTGGGGGATGAGGAATTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACAGGAAGCTAAGAGATGGAAAGGGGAAAATGAGAACGAGGGATATTGTGAGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACCAGCGAAATTGACATACTGCCGGATGGTTATAGATGGAGGAAATACGGACAAAAGGTTGTCAAAGGAAATCCAAATCCGAGGAGCTACTACAAATGCACATCTTTAGGCTGCCCGGTGAGGAAACACATCGAGAGAGCGGCTAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCATGAAGTTCCAGCAGCCCGTGGCAGCGGTGGCAGTGGCTATAATGCCATCAACCGACCTACACCGACCAACATTCCAATGCCGGTGAGGCCGTCTGCCATCGGTAGTCATTCTTTCCCGGCAAATTTTCCGGCCACGTTCCAGCCGGCAAATTTAGCCATGTCAGAAATTGGAGCAGAAGCATCATCATTCCCATTTCAAACATCACAAGGAGTGCCTCCAAGTTTCCAAGTTTCAGGATTTGGATCCGCAGCCAAGGAAGAAGCCAGAGATGACATATACTTCATCAACTCATTTCTATCTTAG 1428 45.38 MNNINQTINTLAGGSSDNRTNNFGMEVPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLLFSFGVFPSPTSGALNLRNDYEEGEQQEMKADVKNYSASSFNPQTGSSVSSYFQSSSSNVTPLNPNGLSCDESGAKSEFVTTEMAAAESKPISQLPIYNREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAIYDPSSADSALLQEDSSVSVGDEEFEPNSPFSNSVDDNENEQEAKRWKGENENEGYCEGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGSGGSGYNAINRPTPTNIPMPVRPSAIGSHSFPANFPATFQPANLAMSEIGAEASSFPFQTSQGVPPSFQVSGFGSAAKEEARDDIYFINSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35773692 35776351 + CmPI595203_10g029520.1 Cmu10g2952 428482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2952 475 MobiDBLite consensus disorder prediction 220 298 - -
Cmu10g2952 475 SMART WRKY_cls 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 SMART WRKY_cls 318 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 ProSiteProfiles WRKY domain profile. 313 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 MobiDBLite consensus disorder prediction 1 24 - -
Cmu10g2952 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 383 IPR044810 GO:0003700(InterPro)
Cmu10g2952 475 MobiDBLite consensus disorder prediction 228 275 - -
Cmu10g2952 475 Gene3D WRKY domain 305 371 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 SUPERFAMILY WRKY DNA-binding domain 166 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 Pfam WRKY DNA -binding domain 170 225 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 Pfam WRKY DNA -binding domain 320 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 SUPERFAMILY WRKY DNA-binding domain 310 378 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 FunFam WRKY transcription factor 159 229 - -
Cmu10g2952 475 Gene3D WRKY domain 156 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 FunFam WRKY transcription factor 33 305 371 - -
Cmu10g2952 475 ProSiteProfiles WRKY domain profile. 164 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu10g2952 475 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g0639 Cmu-Chr3:623807 Cmu10g2952 Cmu-Chr10:35773692 3.70E-88 dispersed
Cmu10g2785 Cmu-Chr10:34450698 Cmu10g2952 Cmu-Chr10:35773692 5.40E-48 dispersed
Cmu10g2952 Cmu-Chr10:35773692 Cmu11g0463 Cmu-Chr11:5135642 8.20E-65 dispersed
Cmu10g2952 Cmu-Chr10:35773692 Cmu05g2447 Cmu-Chr5:33516691 2.00E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7083 PF03106 WRKY 9.50E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2952 K13424 - csv:101205651 798.89