Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2969 ATGCGTTTTAGATGCTTGTTCAACTATGGAAATAAGAATCAAGTTCCAGAGTCCAAGTTAGATAAAGACCCCATGGATTTTTGTTATTGCTTTCTTTTCTCGCGGATAAAGTTTCCTCGGAAATTTTGGCGTCAACTATGTTCTACTGATTGCAAACCAGGAAATGTGAATGACTGTATGAGTTGTAACGAGAAGAATAGAGGGGTAGATGATAGGGAAACTGAGCAGCCAGTTTTTAGGAACTCTGTCGAGGCACAACGGATACCAGCCATCCAGAATGGATCCATAACGGCCCAACAGTTGACGATTGATGATAATCTTCTTGTTGACCCAAAATTGCTATTTATTGGATCGAAGATTGGTGAGGGTGCTCACGGGAAGGTTTATGAAGGCAGGTACCGGAACCAAATTGTGGCCATTAAAGTTCTCCATCGAGGGAGTACTCCAGAAGAAAGAGCAGCTCTTGAAAATCGTTTTGCCCGTGAAGTAAATATGATGTCCCGAGTAAAACATGAAAATCTTGTCAAGTTCATTGGAGCTTGTAAAGAACCTCTAATGGTGATAGTTACAGAGCTATTACCAGGAATGTCACTCAGGAAGTATCTGATGAATAATCGTAAGCAACAGCTGGACCCTCGGATGGCCATTAACTTTGCTTTGGATGTTGCTCGTGCTATGGATTGTCTGCATGCAAATGGGATTATACATAGAGATCTGAAACCTGATAATCTGTTGCTTACTGCAAATCAAAGATCTGTGAAGCTTGCAGACTTTGGACTTGCTAGAGAAGAATCTGTGACTGAGATGATGACTGCTGAAACAGGGACTTACCGCTGGATGGCTCCTGAGTTGTATAGCACTGTGACATTGCGCCAGGGAGAGAAAAAGCATTACAACAACAAAGTCGATGTATACAGCTTTGGAATTGTCTTATGGGAGCTCTTGACCAACCGAATGCCATTTGAAGGGATGTCCAATTTGCAAGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGACCTAGTATTCCAGGTGACATACCTCCCGATTTAGCATTTATAGTACAGTCGTGTTGGGTCGAAGATCCTAACATGAGGCCCAGCTTCAGCCAGATCATCCGCATGCTTAATGCTTATCTGTTTACACTCCCAACTCCTTCACCATCTTCACCATCTTCACCAAAATCTGACACAACAGAGACAGCAACAACTAGCAATGGTGCTATTACCGAGTTCTCTGCTCGTGCAAGAGGAAAGTTTGGATTCCTTCGCCAACTGTTTGCTGCTAAGAGGGCTAAGAACTCGCAATGA 1308 43.2 MRFRCLFNYGNKNQVPESKLDKDPMDFCYCFLFSRIKFPRKFWRQLCSTDCKPGNVNDCMSCNEKNRGVDDRETEQPVFRNSVEAQRIPAIQNGSITAQQLTIDDNLLVDPKLLFIGSKIGEGAHGKVYEGRYRNQIVAIKVLHRGSTPEERAALENRFAREVNMMSRVKHENLVKFIGACKEPLMVIVTELLPGMSLRKYLMNNRKQQLDPRMAINFALDVARAMDCLHANGIIHRDLKPDNLLLTANQRSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDIPPDLAFIVQSCWVEDPNMRPSFSQIIRMLNAYLFTLPTPSPSSPSSPKSDTTETATTSNGAITEFSARARGKFGFLRQLFAAKRAKNSQ 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35915022 35918771 + CmPI595203_10g029690.1 Cmu10g2969 428499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2969 435 CDD STKc_MAP3K-like 120 375 - -
Cmu10g2969 435 PANTHER SERINE-THREONINE PROTEIN KINASE 93 376 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu10g2969 435 FunFam Kinase suppressor of Ras 1 103 193 - -
Cmu10g2969 435 Pfam Protein tyrosine and serine/threonine kinase 116 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 ProSitePatterns Protein kinases ATP-binding region signature. 120 141 IPR017441 GO:0005524(InterPro)
Cmu10g2969 435 MobiDBLite consensus disorder prediction 385 409 - -
Cmu10g2969 435 ProSiteProfiles Protein kinase domain profile. 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 FunFam serine/threonine-protein kinase HT1 195 396 - -
Cmu10g2969 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 SUPERFAMILY Protein kinase-like (PK-like) 113 404 IPR011009 -
Cmu10g2969 435 SMART serkin_6 114 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 Gene3D Transferase(Phosphotransferase) domain 1 197 406 - -
Cmu10g2969 435 Gene3D Phosphorylase Kinase; domain 1 102 193 - -
Cmu10g2969 435 PRINTS Tyrosine kinase catalytic domain signature 190 203 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 PRINTS Tyrosine kinase catalytic domain signature 346 368 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2969 435 PRINTS Tyrosine kinase catalytic domain signature 228 246 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1858 Cmu-Chr9:34711557 Cmu10g2969 Cmu-Chr10:35915022 2.50E-114 dispersed
Cmu10g2140 Cmu-Chr10:27410753 Cmu10g2969 Cmu-Chr10:35915022 6.40E-115 dispersed
Cmu10g2969 Cmu-Chr10:35915022 Cmu11g1140 Cmu-Chr11:21537769 1.30E-64 dispersed
Cmu10g2969 Cmu-Chr10:35915022 Cmu06g1786 Cmu-Chr6:28879435 4.20E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75892 PF07714 PK_Tyr_Ser-Thr 9.60E-62 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2969 - - - 0.0