Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2977 ATGATCACGGTGTGGCTTTGTTATGCTTTATTTGTTGTCGAGAAGAACAGCTTGAAGATAACTTCCCCAGATTCCATCAAGGGTGTTTACGAATGTGCGATTGGGAATTTTGGGGTTCCTGAATATGGAGGCACAATGACTGGCATCGTGCATTATCCTAAAGCCAATCAGAAGGCATGCAAGAGCTTTGAGGATGCCGGTATCTCTTTCAAGTCCAAACCTGGAAGTCTCCCTACCTTTGTTCTTGCCGATCGAGGGGATTGTTACTTCACCACGAAGGCGTGGAATGCACAAAATGGTGGAGCTGCAGCAATTCTTGTTGCAGATGATAGACTTGAACCGTTGATTACCATGGACTCTCCAGAACAAGAGAAGGCAGATGACAATTACCTAAAAGACATTACCATACCTTCTGCTCTTATTAGCAAAAGCTTGGGGGATGCCATCAAGAAAGCTCTATCTAGTGGAGAGATGGTTAATATAAATCTTGATTGGACAGAAGCTCTTCCACATCCTGATGATCGAGTTGAGTATGAATTTTGGACAAATAGTAATGATGAGTGTGGGCCAAAGTGTGATAGTCAGATTGAGTTTGTGAAAAACTTCAAAGGAGCTGCTCAGACGCTTGAGCAGAAAGGGTACACTCAATTTACTCCCCATTATATAACTTGGTATTGCCCAGATGCTTTTACTTTGAGTAAGCAATGCAAATCTCAATGCATCAATCATGGGAGATACTGTGCACCAGATCCCGAACAGGATTTCAGTAAAGGATATGATGGAAAGGATGTGGTTGTTCAAAATCTACGCCAAATCTGTTTCTTTAAAGTTGCAAATGAATCTGGAAAACCTTGGCTTTGGTGGGATTATGTCACTGACTTTTCAATCCGTTGTCCTATGAAAGAAAACAAGTACGACGAGGAATGTGCCAATGAAGTTATTAAATCGTTTGGTATGGATCTTAACAAGATAAAAGAATGTATTGGAGATCCAGAGGCAGATGTGGAGAACCCAATTCTTAAAGCTGAACAGGATGCACAGATTGGTAGGGGTTCCCGTGGAGATGTTACTATATTGCCGACTCTTGTTATAAATAACAGACAGTATAGAGGCAAGCTGGATAAAGGAGCAGTTCTGAAAGGCATTTGTTCTGGTTTTCAGGAGACAACAGAGCCTGCAATTTGTTTAACTGAAGACGTGGAAACAAATGAGTGTTTAACAAATAATGGTGGTTGCTGGCACAATAAGGATGCAAATGTTTCTGCATGCAGGGATACATTTCGAGGAAGAGTTTGTGAATGTCCTACTGTTCGAGGTGTGAAGTTCATTGGAGATGGCTATACTCACTGTGAACCGTCAGGAGCTTTACGCTGTGAAATAAATAATGGGGGTTGTTGGAAGGGCACCCAAGATGGAAGAACTTACTCTGCCTGTTCTGATGACCATACAAAGGGCTGCAAGTGCCCTCCAGGATTTAAAGGCGATGGAGTCCGCAATTGTGAAGATGTGGATGAGTGCAAGGAGAAGCTAGCATGCCAGTGCCCAGAGTGCAAATGTCAGAATACATGGGGCAGCTATGATTGCAGTTGCAGAAATGGTTTGCTGTATATGCACGAACATGATACATGTATAGGTAGCATGGGAAACACTGTGACAAGCTGGAGCGTTGTAAAGATTACTGTCCTTGTGTTAGCCATCACTGGGATCGCGGGATATGCAGTTTACAAGTACAGAATCCGGAGGTATATGGATTCTGAGATACGGGCTATCATGGCTCAATATATGCCCTTGGACAATCAAGGAGAGACTTCTAATCAGCATTTGCCATTTGGTTCCTCTGGGAAGAGGCTTGATTGGAGAAGCATGCTTTTCAAACTATTCCTCATTCTTGTCCTAGCTCTAGCTCCTGCTTCCGTTTCTGCTTTGGACACTGTTTTCAACGACGACGTTTTGGGATTGATAGTGTTCAAAGCTGGCCTTCAAGACCCTATGGGTAAATTGGTCACATGGAACGAAGACGATGAAACTCCCTGCAATTGGTTTGGTGTCAAATGCAATCCTAATACCAATAGGGTCTCTGAGCTTGTCCTTGATGGATTCTCTTTGTCTGGTCACATTGATCGTGGACTCCTAAGGTTGCAATTCCTTCAAATACTCTCACTTGCCAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCACACCTTGTAAATTTGCAAGTCATTGATTTCAGTGACAACAGTTTATCTGGACCCATTCCTGAACAGCTTTTCCTGCAATGTGGGTCTATAAGAGTTCTTTCATTTGCCAGAAACAACCTCATAGGAAACATCCCTCAATCCTTAACCTCTTGCTTCTCTCTGGAGATTCTTAACTTCTCCTCCAACCACCTTTCTGGAAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTCTGGATTTCTCTAACAACTTGCTTGAGGGGCAGATTCCTCCTGGAATTCAAAATTTGTACGATTTGAGATTTGTTAGCTTACACAAGAATCGATTGTCTGGAAAGCTTCCTGAGGATATTGGTGGCTGCTTACTTCTAAAATCAATCGATTTTAGTGAGAATATCCTTTCGGGTGGTCTTCCAGAGTCAATGCAGATGCTCAGTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAAGTCCCTCGTTGGATTGGGGAACTTAAAAATCTTGACACTTTAGATCTTTCTGCCAATAACTTTTCTGGTCAGCTGCCAAGTTCAATTGGCAACCTCCAATTGCTGAAGAAGTTTAATGTATCCACGAACTATTTAACTGGAAACTTGCCAGAATCCATGGCAAATTGTAATAACCTCTTGAGTATTGATGCTAGCCATAATCATTTGACTGGCAATCTCCCTACATGGATCTTTCGGGAAGCTATGCCAACTGTTCCATTTTCTTCGTACAGACTGGGAGAAAACCTTTCATCTCCAGCCCCTTTCCAGGGTCTTCAAGTTTTGGATTTATCTTCAAATGTTTTCTCTGGTCACATTCCATCTAATGTTGGAGAACTTAGTAACTTGCAGTTGCTGAACATATCCAGAAACCATCTCGTGGGTTCTATTCCGGGGAGCATTGGTGAACTAAAATCAGCATATGCTCTTGACTTCAGTGACAATCAATTAAATGGAAGCATCCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGCTGAAGAAGAACTCCCTCACTGGGGAAATCCCAGTCAACATTGACAAATGCTCCTTGTTAACGTCATTGATTCTTTCTCACAACAACCTAACAGGCTCAATTCCTGCTTCCGTTGCAAACCTCTCCAACCTTGAAGATGTAGACTTGTCTTTCAACAAACTGTCCGGAAGCCTGCCCAAGGAGCTGACTAATCTTTCCCACCTCCTCTCCTTCAATATCTCCCACAATCACCTTGAGGGAGAACTGCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTGTCTATATCACATAACCCATCTCTTTGTGGTGCTGTTGTCAATAGGTCCTGCCCCTCTGTCCATCCAAAACCGATTGTCCTAAACCCAAATTCTTCTGATACCAATGGAAATTCCCCCTCCCACAAGCATCATCATGAGATCATACTCAGCATATCTTCCATAATTGCCATTGGTGCAGCTTCTTTTATCCTACTTGGTGTAGTAGCTGTCACTATCCTCAATATCAGAGCAAGGTCCTCACAGTCACGGTCTGCTGCTCTTGTATTGTCTGCCGGGGAGGACTTTAGCTGCTCCCCAAAAACTAATCCAGACTACGGAAAGCTCATCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAGCATTGCTGAACAAGGACTGCGAACTTGGTCGAGGTGGATTTGGGGTTGTTTACAAAACAGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGTTGACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCACTTGAAGGGTATTACTGGACAACCTCCTTGCAGCTCCTCATTTATGAATACGTCCCCAATGGAAGTTTGTATAAACATCTACATGATGGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGATTGGCTTATTTGCACCACAATAGTATTATTCACTACAACTTGAAGTCAACCAATGTTTTGATAGACAGTTCTGGGAAACCAAAAGTAGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGCGCTTTGGGATACATGGCTCCAGAGTTTGCCTGCAAAACAGTGACTATAACTGAAAAGTGTGATGTGTATGGTTTTGGCATCTTGGTTTTGGAAGTGGTGACAGGAAAAAGACCTGTCGAGTACATGGAAGATGATGTTATAGTTCTCTGTGATATGGTGAGGGTAGCTTTGGATGAAGGCACGGTGGAGCAATGTGTTGATGAGAGGCTCCAATCGAACTTCCGTATTGAAGAGGCCATTCCTGTAATGAAACTAGGTTTGATATGTGCATCTCAAGTACCATCGAACAGGCCAGACATGAATGAGGTGGTCAATATATTAGAGTTGATCCAATCCCCCTCTGAAGTTGACGAGGAGTTGGAATGA 4746 43.26 MITVWLCYALFVVEKNSLKITSPDSIKGVYECAIGNFGVPEYGGTMTGIVHYPKANQKACKSFEDAGISFKSKPGSLPTFVLADRGDCYFTTKAWNAQNGGAAAILVADDRLEPLITMDSPEQEKADDNYLKDITIPSALISKSLGDAIKKALSSGEMVNINLDWTEALPHPDDRVEYEFWTNSNDECGPKCDSQIEFVKNFKGAAQTLEQKGYTQFTPHYITWYCPDAFTLSKQCKSQCINHGRYCAPDPEQDFSKGYDGKDVVVQNLRQICFFKVANESGKPWLWWDYVTDFSIRCPMKENKYDEECANEVIKSFGMDLNKIKECIGDPEADVENPILKAEQDAQIGRGSRGDVTILPTLVINNRQYRGKLDKGAVLKGICSGFQETTEPAICLTEDVETNECLTNNGGCWHNKDANVSACRDTFRGRVCECPTVRGVKFIGDGYTHCEPSGALRCEINNGGCWKGTQDGRTYSACSDDHTKGCKCPPGFKGDGVRNCEDVDECKEKLACQCPECKCQNTWGSYDCSCRNGLLYMHEHDTCIGSMGNTVTSWSVVKITVLVLAITGIAGYAVYKYRIRRYMDSEIRAIMAQYMPLDNQGETSNQHLPFGSSGKRLDWRSMLFKLFLILVLALAPASVSALDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDETPCNWFGVKCNPNTNRVSELVLDGFSLSGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLVNLQVIDFSDNSLSGPIPEQLFLQCGSIRVLSFARNNLIGNIPQSLTSCFSLEILNFSSNHLSGKLPSGLWYLRGLQSLDFSNNLLEGQIPPGIQNLYDLRFVSLHKNRLSGKLPEDIGGCLLLKSIDFSENILSGGLPESMQMLSSCTYLNLRGNSLTGEVPRWIGELKNLDTLDLSANNFSGQLPSSIGNLQLLKKFNVSTNYLTGNLPESMANCNNLLSIDASHNHLTGNLPTWIFREAMPTVPFSSYRLGENLSSPAPFQGLQVLDLSSNVFSGHIPSNVGELSNLQLLNISRNHLVGSIPGSIGELKSAYALDFSDNQLNGSIPAEIGGAISLKELRLKKNSLTGEIPVNIDKCSLLTSLILSHNNLTGSIPASVANLSNLEDVDLSFNKLSGSLPKELTNLSHLLSFNISHNHLEGELPVGGFFNTISPLSISHNPSLCGAVVNRSCPSVHPKPIVLNPNSSDTNGNSPSHKHHHEIILSISSIIAIGAASFILLGVVAVTILNIRARSSQSRSAALVLSAGEDFSCSPKTNPDYGKLIMFSGDAEFVVGAQALLNKDCELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVALEGYYWTTSLQLLIYEYVPNGSLYKHLHDGTGDNCLSWRQRFKIVLGMAKGLAYLHHNSIIHYNLKSTNVLIDSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITEKCDVYGFGILVLEVVTGKRPVEYMEDDVIVLCDMVRVALDEGTVEQCVDERLQSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEVDEELE 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35966214 35977316 - CmPI595203_10g029770.1 Cmu10g2977 428507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2977 1581 Gene3D - 8 172 - -
Cmu10g2977 1581 Gene3D Ribonuclease Inhibitor 762 868 IPR032675 -
Cmu10g2977 1581 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1292 1374 - -
Cmu10g2977 1581 SMART LRR_typ_2 1120 1143 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 906 930 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 737 761 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 1024 1048 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 1144 1168 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 713 736 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 834 858 IPR003591 -
Cmu10g2977 1581 SMART LRR_typ_2 810 833 IPR003591 -
Cmu10g2977 1581 Gene3D Ribonuclease Inhibitor 985 1193 IPR032675 -
Cmu10g2977 1581 SUPERFAMILY PA domain 80 156 IPR046450 -
Cmu10g2977 1581 ProSitePatterns Calcium-binding EGF-like domain signature. 502 528 IPR018097 GO:0005509(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 813 834 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 739 758 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 1003 1024 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 716 737 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 1099 1120 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 886 906 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 788 810 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 1122 1144 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 1026 1048 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 Pfam Leucine Rich Repeat 908 930 IPR001611 GO:0005515(InterPro)
Cmu10g2977 1581 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1375 1576 - -
Cmu10g2977 1581 ProSitePatterns Protein kinases ATP-binding region signature. 1304 1327 IPR017441 GO:0005524(InterPro)
Cmu10g2977 1581 CDD EGF_CA 502 533 - -
Cmu10g2977 1581 Pfam PA domain 52 149 IPR003137 -
Cmu10g2977 1581 Pfam Leucine rich repeat N-terminal domain 647 686 IPR013210 -
Cmu10g2977 1581 SMART egfca_6 502 544 IPR001881 GO:0005509(InterPro)
Cmu10g2977 1581 SUPERFAMILY RNI-like 875 1182 - -
Cmu10g2977 1581 FunFam Vacuolar-sorting receptor 1 8 172 - -
Cmu10g2977 1581 ProSiteProfiles Protein kinase domain profile. 1298 1570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2977 1581 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 627 1568 IPR050647 -
Cmu10g2977 1581 Gene3D Laminin 455 544 - -
Cmu10g2977 1581 Gene3D Transferase(Phosphotransferase) domain 1 1375 1580 - -
Cmu10g2977 1581 Gene3D Phosphorylase Kinase; domain 1 1288 1374 - -
Cmu10g2977 1581 Gene3D Ribonuclease Inhibitor 869 983 IPR032675 -
Cmu10g2977 1581 Gene3D Laminin 395 445 - -
Cmu10g2977 1581 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 647 925 - -
Cmu10g2977 1581 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 926 1194 - -
Cmu10g2977 1581 Pfam Protein tyrosine and serine/threonine kinase 1300 1566 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2977 1581 CDD STKc_IRAK 1304 1570 - -
Cmu10g2977 1581 SUPERFAMILY L domain-like 664 973 - -
Cmu10g2977 1581 SUPERFAMILY Protein kinase-like (PK-like) 1302 1570 IPR011009 -
Cmu10g2977 1581 FunFam vacuolar-sorting receptor 1 395 451 - -
Cmu10g2977 1581 Gene3D Ribonuclease Inhibitor 650 761 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0720 Cmu-Chr2:7398920 Cmu10g2977 Cmu-Chr10:35966214 9.30E-274 dispersed
Cmu07g0568 Cmu-Chr7:6975970 Cmu10g2977 Cmu-Chr10:35966214 1.20E-165 dispersed
Cmu07g1554 Cmu-Chr7:30756097 Cmu10g2977 Cmu-Chr10:35966214 9.70E-23 dispersed
Cmu08g0346 Cmu-Chr8:10286939 Cmu10g2977 Cmu-Chr10:35966214 5.70E-07 dispersed
Cmu10g1164 Cmu-Chr10:4334388 Cmu10g2977 Cmu-Chr10:35966214 4.30E-83 dispersed
Cmu10g1820 Cmu-Chr10:22845950 Cmu10g2977 Cmu-Chr10:35966214 2.90E-262 dispersed
Cmu10g2977 Cmu-Chr10:35966214 Cmu11g1709 Cmu-Chr11:29264261 2.70E-51 dispersed
Cmu10g2977 Cmu-Chr10:35966214 Cmu11g0570 Cmu-Chr11:6280047 4.50E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75894 PF07714 PK_Tyr_Ser-Thr 2.60E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2977 - - - 0.0