Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2987 ATGAAAGTCTGGAACAACAATCCCATCTCTCCCCCGAGGTCTGCCACTGTTGCTGTCACTGTCACTGTCAATTCTACAACTACAACAACCATTGCAACAGTGATTTGTCCATTTTTCGCTCTTTGCCACACCAAACTAAGTGGAGTCGAGATGGGCAACTGCGGTACTAGAGAAGAGTCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTCGTCTTCCATGGCTGTGAAAAACGCCAACAACAATGCTACAGATAAAAGGCACATTCATAACCGGTCCATATCAGATCTAAGCGATCCTTCAACCCCTCGCAACCTCGAGGACTTTAGAAAGAATTCGGTGCTTTACACACATGTTATCGCCTTCACATTATACGAGCTGGAGACGATCACCAAGAGTTTCCGCTCCGATTACATTCTCGGAGAGGGCGGTTTTGGAACTGTTTATAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCTGTCGCTGTCAAGGTTCTCAACAAGGAAGGCCTCCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTAAGACATCCGAACCTTGTCAAGTTGATTGGTTACTGCTGCGAGGATGATCACCGATTACTTGTCTATGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAAGACAACTGTTCCGTTGCCATGGGCAAGAAGAATGATGATAGCTCTTGGAGCGGCCAAGGGACTTGCTTTCCTTCATAATGCTGAACGGCCCGTTATCTATCGGGATTTTAAAACCTCTAATATACTGTTGGACTCTGACTACACAGCTAAGCTCTCTGATTTTGGGCTTGCAAAAGCTGGACCACAAGGTGATGAGACGCATGTTTCTACTCGAGTAATGGGTACTTATGGTTATGCTGCCCCCGAATATGTCATGACTGGGCACTTGACAGCAAGGAGTGATGTATACAGTTTCGGCGTTGTTCTTCTGGAGCTTTTGACGGGAAGAAAGTCTGTTGACAAGACAAAACCAAGCAAGGAGCAGAATTTGGTAGATTGGGCCCGACCTAAACTAAATGACAAGAGGAAGTTGCTACAAATAATTGACCCTAGATTGGAAAGTCAATACTCGATAAGGGCAGCACAGAAGGCCTGCAGCCTAGCGTACTATTGCCTGAGCCAGAATCCAAAAGCAAGACCATTAATGAGCGATGTTGTTGAAACTCTGGAACCATTGCAGAGCGGTACCGATGCAATTGAATATTCATCAACGGGAACTAGTCCATTTGTTAGGGGTGGCGTCCCTGATTACAGGATGCGGCAAAGGTTTATCGACAATGTTGGTTCGGGGGCTAGTTGCCGGTCTCCTAACCCCAACTGTTCCCCGAGCGGCCCTGCTGCATGTAGGGTTAGATGA 1431 46.68 MKVWNNNPISPPRSATVAVTVTVNSTTTTTIATVICPFFALCHTKLSGVEMGNCGTREESAVVSNAQVQQLHTSSSMAVKNANNNATDKRHIHNRSISDLSDPSTPRNLEDFRKNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTTVPLPWARRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTKPSKEQNLVDWARPKLNDKRKLLQIIDPRLESQYSIRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSGTDAIEYSSTGTSPFVRGGVPDYRMRQRFIDNVGSGASCRSPNPNCSPSGPAACRVR 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36037587 36054450 + CmPI595203_10g029870.1 Cmu10g2987 428517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2987 476 Pfam Protein kinase domain 141 412 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2987 476 SUPERFAMILY Protein kinase-like (PK-like) 112 415 IPR011009 -
Cmu10g2987 476 Gene3D Phosphorylase Kinase; domain 1 101 219 - -
Cmu10g2987 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2987 476 ProSitePatterns Protein kinases ATP-binding region signature. 143 172 IPR017441 GO:0005524(InterPro)
Cmu10g2987 476 PANTHER OS01G0588500 PROTEIN-RELATED 112 418 IPR050823 -
Cmu10g2987 476 FunFam Serine/threonine-protein kinase BIK1 103 219 - -
Cmu10g2987 476 FunFam Probable serine/threonine-protein kinase PBL8 220 432 - -
Cmu10g2987 476 ProSiteProfiles Protein kinase domain profile. 137 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2987 476 Gene3D Transferase(Phosphotransferase) domain 1 220 430 - -
Cmu10g2987 476 CDD STKc_IRAK 143 417 - -
Cmu10g2987 476 MobiDBLite consensus disorder prediction 84 105 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1112 Cmu-Chr7:26166468 Cmu10g2987 Cmu-Chr10:36037587 6.00E-120 dispersed
Cmu09g0100 Cmu-Chr9:1155222 Cmu10g2987 Cmu-Chr10:36037587 1.90E-105 dispersed
Cmu10g2987 Cmu-Chr10:36037587 Cmu11g0143 Cmu-Chr11:1964525 3.40E-127 dispersed
Cmu03g2062 Cmu-Chr3:29024758 Cmu10g2987 Cmu-Chr10:36037587 3.80E-129 transposed
Cmu11g1145 Cmu-Chr11:21663836 Cmu10g2987 Cmu-Chr10:36037587 1.80E-126 transposed
Cmu10g2987 Cmu-Chr10:36037587 Cmu04g0678 Cmu-Chr4:20888500 1.60E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75895 PF00069 Pkinase 9.90E-48 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2987 - - - 0.0