Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g2988 ATGTCACCTGTGCAAACGCTGCTACTTTTCGCTTTCTTCTACGCTGGAATCGACACAACCGGTTCTTTCACTGATCCCCGCGATTCTGCGGCGCTGGAGTCCCTGAAAAACGAATGGCAAAATACACCACCAAGCTGGGGAGCATCAAATGATCCGTGTGGAGCTCCCTGGGAAGGAGTGGCTTGCATCAATTCAAGAGTCACGGCACTGAGATTATCAACTATGGGCCTGAAAGGTAAACTTGGTGGTGACATTGGAGGCCTGACCGAACTAAAATCATTGGACCTTTCGTTCAATAAAGATCTCACTGGTTCAATCTCTCCAGCATTAGGGGATCTACAGAGTTTGAGTATCTTGATCCTGGCTGGGTGTGGCTTCAGTGGCAGTATTCCTGAACAACTGGGCAATCTTTCCAATCTATCCTTCTTGGCTTTAAACTCTAACAACTTCACTGGTTCCATACCGCCATCTCTGGGGAAACTCTCCAATCTCTATTGGCTGGACCTGGCAGATAATCAATTGACAGGTAGTCTCCCAGTCTCGACTTCCCAATCTTCTGGTTTGGACCTCCTTCTGAAGGCTAAACATTTTCATTTCAACAAAAACCAGTTGTCAGGTTCCATTTCACCTAAACTTTTTAGCTCTGAGATGGTATTAATACACATATTATTTGATGGAAATAATTTTTCTGGGAATATCCCACCGACACTGGGACTTGTTAAGACCCTTGAGGTTCTTCGCCTAGATCGGAATTCTCTGACAGGAACTGTCCCATCAAATCTGAACAACCTAACAAATATCAATGAATTGAATTTAGCCAACAATAAGTTGACGGGTCCACTGCCAAACTTAACTCAAATGAGCTCACTAAATTACTTGGACCTTAGTAACAACTCATTTGATTCATCAGAAGCACCAGAATGGTTCTCAAATCTACAATCTCTCACCACTCTGATCATTGAATTTGGGTCAATTCGAGGACCTGTGCCAGAAGGAGTGTTTAGCTTACCACAAATACAACAAATAAAATTGAAGAATAATGCATTTAGTGACACATTTAATATGGGTGACAAAGTCAGCGAACAGTTGCAGCTCGTTGATTTGCAAAATAACAATATTTCCCATTTTACCCTTGGTTCAAGATACACCAAAACTTTGATGCTTATAGGGAATCCTGTGTGTAGCACTGATGCTACCCTCTCAAATACAAACTACTGCCAAGTTCAAAATCAACCGGTGAAACCCTATTCAACCAGCCTTGCCAGTTGTTTAAGTAAGTCATGTTCTCCAGATGAGAAGTTAAGTCCTCAGAGTTGTGAATGTGCCTATCCATTTGAAGGGACTTTATACTTTAGAGCACCCTCGTTCAGGGAATTGTCCAATGTGACTTTGTTTCATTCTTTGGAAATGAGCCTTTGGAAAAAACTGGACCTTACACCGGGTTCAGTTTCTATTCAAAACCCTTTCTTCAATGTTGATGATTATCTTCAGATGCAAATTGCACTTTTTCCACCAGACGGAAAGTATTTTAATAGGTCAGATATTCAGAGGATTGGGTTTGACTTGAGCAATCAAACCTACAAACCTCCCCCAGAATTTGGGCCATTTTATTTCATTGCATCTCCCTACGGTTTTGCAGGCACGGCTAGGGGAACTTCAATCAGCCCTGGAGTGATAATTGGGGTAGCTATTGGTTGTGCCTTCCTCATTCTAGGCCTCATCGGAGTTGGAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAAGGCCATCGGGATGAGTCGGCCATTTGCTTCTTGGGCACCAAGTGGCAATGATAGTGGGGGCGCACCACAATTGAAGGGAGCCCGATGGTTTTCTTATGATGAACTTAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGGTAGGATCTGGAGGATATGGCAAGGTATATAGAGGAATGCTTGTGGATGGACAAGCAGTTGCGATCAAAAGAGCTCAGCAAGGATCAATGCAAGGTGGCCTTGAGTTCAAGACGGAAATCGAACTGCTTTCACGAGTTCATCACAAGAACCTTCTTGGCCTCGTGGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTGAGAGATAGCCTATCTGGAAAATCTGGTATCAATCTTGACTGGAAGAGAAGACTTCGTATTGCACTTGGGTCTGCCAGAGGATTGACTTACTTGCATGAACTTGCTAATCCTCCCATAATCCATAGAGACATTAAGTCCACCAATATTTTATTGGATGAACATTTAAATGCAAAAGTTGCAGATTTTGGCTTGTCCAAGCTTGTCTCAGACAGCGAAAAGGGACACGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGACTCAACAATTGACGGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTATGTTGGAATTATTAACGGCTAAGCTGCCTATCGAGAAAGGAAAGTATGTAGTTCGTGAGGTGCGCATGTTGATGAATAAAAGTGAAGAAGAATATTATGGTCTGAAGCAGATAGTGGATGTAACCATAATAAATAATACAACGACCATTATTGGGCTTGGAAGGTTCTTGGAGTTGGCCATGCAATGCGTTGAAGAATCAGCTGTAGATCGTCCCACAATGAGTGAAGTGGTCAAGGCAATTGAGAGTATTTTGCAGAATGATGGAATTAATACGAACACAACATCTGCATCCTCGTCTGCAACTGACTTTGGGGCTTCCAGAACCGCTCCTAGGCATCCCTATAATGATTCTATACCAAAAAAGGATGCTAATGACAGCAATGCTTTTGATTACAGTGGTGGATACACTCATTCGACAAAAGTGGAGCCCAAATAG 2901 42.12 MSPVQTLLLFAFFYAGIDTTGSFTDPRDSAALESLKNEWQNTPPSWGASNDPCGAPWEGVACINSRVTALRLSTMGLKGKLGGDIGGLTELKSLDLSFNKDLTGSISPALGDLQSLSILILAGCGFSGSIPEQLGNLSNLSFLALNSNNFTGSIPPSLGKLSNLYWLDLADNQLTGSLPVSTSQSSGLDLLLKAKHFHFNKNQLSGSISPKLFSSEMVLIHILFDGNNFSGNIPPTLGLVKTLEVLRLDRNSLTGTVPSNLNNLTNINELNLANNKLTGPLPNLTQMSSLNYLDLSNNSFDSSEAPEWFSNLQSLTTLIIEFGSIRGPVPEGVFSLPQIQQIKLKNNAFSDTFNMGDKVSEQLQLVDLQNNNISHFTLGSRYTKTLMLIGNPVCSTDATLSNTNYCQVQNQPVKPYSTSLASCLSKSCSPDEKLSPQSCECAYPFEGTLYFRAPSFRELSNVTLFHSLEMSLWKKLDLTPGSVSIQNPFFNVDDYLQMQIALFPPDGKYFNRSDIQRIGFDLSNQTYKPPPEFGPFYFIASPYGFAGTARGTSISPGVIIGVAIGCAFLILGLIGVGIYAIRQKKRAEKAIGMSRPFASWAPSGNDSGGAPQLKGARWFSYDELKKCTNNFSMSNEVGSGGYGKVYRGMLVDGQAVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLVGFCFEQGEQMLVYEFMPNGTLRDSLSGKSGINLDWKRRLRIALGSARGLTYLHELANPPIIHRDIKSTNILLDEHLNAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYVVREVRMLMNKSEEEYYGLKQIVDVTIINNTTTIIGLGRFLELAMQCVEESAVDRPTMSEVVKAIESILQNDGINTNTTSASSSATDFGASRTAPRHPYNDSIPKKDANDSNAFDYSGGYTHSTKVEPK 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 36062105 36070404 + CmPI595203_10g029880.1 Cmu10g2988 428518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g2988 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 751 763 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2988 966 Gene3D Transferase(Phosphotransferase) domain 1 707 930 - -
Cmu10g2988 966 ProSiteProfiles Protein kinase domain profile. 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2988 966 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 707 919 - -
Cmu10g2988 966 Gene3D Ribonuclease Inhibitor 219 283 IPR032675 -
Cmu10g2988 966 MobiDBLite consensus disorder prediction 912 927 - -
Cmu10g2988 966 CDD STKc_IRAK 637 905 - -
Cmu10g2988 966 FunFam Leucine-rich repeat protein kinase family protein 600 706 - -
Cmu10g2988 966 SMART serkin_6 631 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu10g2988 966 Gene3D Ribonuclease Inhibitor 25 218 IPR032675 -
Cmu10g2988 966 FunFam Predicted protein 186 405 - -
Cmu10g2988 966 Gene3D Ribonuclease Inhibitor 284 423 IPR032675 -
Cmu10g2988 966 SUPERFAMILY Protein kinase-like (PK-like) 616 916 IPR011009 -
Cmu10g2988 966 Pfam Protein tyrosine and serine/threonine kinase 633 901 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu10g2988 966 PANTHER RECEPTOR-LIKE PROTEIN 55 39 903 - -
Cmu10g2988 966 FunFam Leucine-rich repeat family protein 27 183 - -
Cmu10g2988 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 659 IPR017441 GO:0005524(InterPro)
Cmu10g2988 966 MobiDBLite consensus disorder prediction 912 966 - -
Cmu10g2988 966 SUPERFAMILY L domain-like 43 411 - -
Cmu10g2988 966 Gene3D Phosphorylase Kinase; domain 1 605 706 - -
Cmu10g2988 966 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cmu10g2988 966 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515(InterPro)
Cmu10g2988 966 Pfam Leucine Rich Repeat 289 312 IPR001611 GO:0005515(InterPro)
Cmu10g2988 966 Pfam Leucine Rich Repeat 115 137 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0161 Cmu-Chr5:1397498 Cmu10g2988 Cmu-Chr10:36062105 3.80E-62 dispersed
Cmu10g2988 Cmu-Chr10:36062105 Cmu11g0534 Cmu-Chr11:5829654 1.40E-71 dispersed
Cmu02g0002 Cmu-Chr2:74339 Cmu10g2988 Cmu-Chr10:36062105 3.70E-222 transposed
Cmu10g2084 Cmu-Chr10:26795691 Cmu10g2988 Cmu-Chr10:36062105 0.00E+00 transposed
Cmu10g2988 Cmu-Chr10:36062105 Cmu04g0671 Cmu-Chr4:20742044 3.80E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75896 PF07714 PK_Tyr_Ser-Thr 8.50E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g2988 - - - 0.0