Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0002 ATGCTCTTCTTCTTCGCCGACACTGTGAATTCTATTGTGAGGCTGAAAGAGACTCTCCAACATTGGCAAGGCGTCACAGTTTGCCCCAAATCCAAAGCAGCAGCAGCCCATGAAAATGGAAGCCAAAATCAAAATCATAATCATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACAAATGTGTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAGCATCCACCCGATGTCCCCAAAGGGTATTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTTATCATTCCCACCAGCTATCTTAGTCATTCCGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTCGATCATACCGGCGGGCTCACTTTCCCATGCGAGATCGAAACATTCAAATACCTTCTCAAGTGCATGGAGAGCCAGCAGAAGGATCATCCTGATGACCACACCCCAGCTGAGAGTTGA 483 48.65 MLFFFADTVNSIVRLKETLQHWQGVTVCPKSKAAAAHENGSQNQNHNHGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHTGGLTFPCEIETFKYLLKCMESQQKDHPDDHTPAES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 393671 395247 - CmPI595203_11g000020.1 Cmu11g0002 428524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0002 160 Pfam Auxin responsive protein 54 143 IPR003676 GO:0009733(InterPro)
Cmu11g0002 160 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 144 IPR003676 GO:0009733(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2681 Cmu-Chr5:35333587 Cmu11g0002 Cmu-Chr11:393671 3.50E-18 dispersed
Cmu08g0705 Cmu-Chr8:19376605 Cmu11g0002 Cmu-Chr11:393671 5.70E-14 dispersed
Cmu08g1385 Cmu-Chr8:26012503 Cmu11g0002 Cmu-Chr11:393671 3.60E-16 dispersed
Cmu10g2613 Cmu-Chr10:32909292 Cmu11g0002 Cmu-Chr11:393671 1.80E-13 dispersed
Cmu11g0002 Cmu-Chr11:393671 Cmu11g0377 Cmu-Chr11:4145588 5.90E-15 dispersed
Cmu11g0002 Cmu-Chr11:393671 Cmu04g1052 Cmu-Chr4:25074263 2.80E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0002 K14488 - csv:101207913 300.056