Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0008 | ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAGCAGCAGCAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA | 918 | 50.98 | MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSSNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 481676 | 482593 | + | CmPI595203_11g000080.1 | Cmu11g0008 | 428530 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0008 | 305 | MobiDBLite | consensus disorder prediction | 200 | 221 | - | - | |
Cmu11g0008 | 305 | FunFam | Zinc-finger homeodomain protein 2 | 220 | 291 | - | - | |
Cmu11g0008 | 305 | Pfam | ZF-HD protein dimerisation region | 83 | 135 | IPR006456 | - | |
Cmu11g0008 | 305 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 85 | 134 | IPR006456 | - | |
Cmu11g0008 | 305 | NCBIfam | homeobox domain, ZF-HD class | 230 | 286 | IPR006455 | - | |
Cmu11g0008 | 305 | SUPERFAMILY | Homeodomain-like | 223 | 291 | IPR009057 | - | |
Cmu11g0008 | 305 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
Cmu11g0008 | 305 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 67 | 288 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Cmu11g0008 | 305 | Gene3D | - | 220 | 292 | - | - | |
Cmu11g0008 | 305 | MobiDBLite | consensus disorder prediction | 57 | 79 | - | - | |
Cmu11g0008 | 305 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 84 | 135 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1793 | Cmu-Chr1:31618341 | Cmu11g0008 | Cmu-Chr11:481676 | 5.00E-47 | dispersed | |
Cmu05g2486 | Cmu-Chr5:33738344 | Cmu11g0008 | Cmu-Chr11:481676 | 1.80E-32 | dispersed | |
Cmu08g1086 | Cmu-Chr8:23127870 | Cmu11g0008 | Cmu-Chr11:481676 | 7.60E-46 | dispersed | |
Cmu09g1751 | Cmu-Chr9:33533069 | Cmu11g0008 | Cmu-Chr11:481676 | 3.80E-17 | dispersed | |
Cmu10g1661 | Cmu-Chr10:18561392 | Cmu11g0008 | Cmu-Chr11:481676 | 1.50E-36 | dispersed | |
Cmu10g2256 | Cmu-Chr10:28737137 | Cmu11g0008 | Cmu-Chr11:481676 | 2.50E-35 | dispersed | |
Cmu11g0008 | Cmu-Chr11:481676 | Cmu08g1440 | Cmu-Chr8:26502425 | 1.40E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7087 | PF04770 | ZF-HD_dimer | 3.10E-29 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0008 | - | - | - | 0.0 |