Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0008 ATGGATCTGACTACTCAAGATCCTCCTATCCCCATCCCTATTCCCATCCCCTTAAATAGTCGTTACGGCGGCCACGACCATGACCATATCATCCACCACCACCATGACCCCTCTGCCACCCGCAACCACATCATCGCGGCCACCATCAATGGTGGAAGCCCACTTCCAACCTCTCAAATGGAAGTTGACCTTCACCACCATAACAACAATAACAATAACAACAGCAGCAGCAACAACAAGAAGCATGTCAAATACAAAGAATGTCTCAAAAACCATGCAGCTTCCATGGGAGGCAATGCTACGGATGGCTGCGGCGAGTTTATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCGGCCTGCAACTGTCATAGAAACTTCCATCGAAAAGAGATAGAAGGAGAATCCTACGATTGGCTTCACCCCTCTCGCCTCGGGCGGAAGCTTCTCGTCGGTGGAAAGAACATGATCGCCCCACCAGAGGCTGCCGCATTCGCATACCCAACCCCTACTGGGGCGGCGTTCATATCATCAAGAGCAGCAACAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGTGGGGGCGGCGGGCACTCAGAGTCGGAGGAGCAGGAGGAGGCGACAGGGGCAGGGGTCGGGGGAAGGGTGTATTCAGGGCCGATGATGAACAAGAAGCGATTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAAAAGCAAGAGGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGAAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCATAATCTTGCCAAGAAGGATATAATTTCCCCTTCCCATTCTCCTAATCCCTTAAATTAA 918 50.98 MDLTTQDPPIPIPIPIPLNSRYGGHDHDHIIHHHHDPSATRNHIIAATINGGSPLPTSQMEVDLHHHNNNNNNNSSSNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEGESYDWLHPSRLGRKLLVGGKNMIAPPEAAAFAYPTPTGAAFISSRAATAQPHHMIMSYNMLGGGGGHSESEEQEEATGAGVGGRVYSGPMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDIISPSHSPNPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 481676 482593 + CmPI595203_11g000080.1 Cmu11g0008 428530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0008 305 MobiDBLite consensus disorder prediction 200 221 - -
Cmu11g0008 305 FunFam Zinc-finger homeodomain protein 2 220 291 - -
Cmu11g0008 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Cmu11g0008 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Cmu11g0008 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Cmu11g0008 305 SUPERFAMILY Homeodomain-like 223 291 IPR009057 -
Cmu11g0008 305 MobiDBLite consensus disorder prediction 57 80 - -
Cmu11g0008 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 67 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu11g0008 305 Gene3D - 220 292 - -
Cmu11g0008 305 MobiDBLite consensus disorder prediction 57 79 - -
Cmu11g0008 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1793 Cmu-Chr1:31618341 Cmu11g0008 Cmu-Chr11:481676 5.00E-47 dispersed
Cmu05g2486 Cmu-Chr5:33738344 Cmu11g0008 Cmu-Chr11:481676 1.80E-32 dispersed
Cmu08g1086 Cmu-Chr8:23127870 Cmu11g0008 Cmu-Chr11:481676 7.60E-46 dispersed
Cmu09g1751 Cmu-Chr9:33533069 Cmu11g0008 Cmu-Chr11:481676 3.80E-17 dispersed
Cmu10g1661 Cmu-Chr10:18561392 Cmu11g0008 Cmu-Chr11:481676 1.50E-36 dispersed
Cmu10g2256 Cmu-Chr10:28737137 Cmu11g0008 Cmu-Chr11:481676 2.50E-35 dispersed
Cmu11g0008 Cmu-Chr11:481676 Cmu08g1440 Cmu-Chr8:26502425 1.40E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7087 PF04770 ZF-HD_dimer 3.10E-29 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0008 - - - 0.0