Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0015 ATGGTGTTCCAAGATTTCGACCAAATCTCTGAACGCCGACGCGCCGAGAGGGCACGTAAGTTTCGAAAACGAGTCACTATCGCTGTGGTCTCGGCCTCTGTGATCCTCCTCCTCGTTGCTGCCGCTGTGTTCGTCCAGGTCTCCTCCTCCTCCAAGTCCACCACCAAAAATGGCGATAGCAAGAGTAGTGGCAACTCTAAACAACCCGTGCCACCCGACACGAAACAAGTGTCGCGCATCGAGAAAATGATTACCATGATATGCAACTCGACAGACTACAAAGGCAAATGCGAGAGCACTCTAAAAGATGGCGTCCACACGGATCCTGATTCCTCGGACCCGAAAGACCTCATCAAGCTGGCAATCTCGGCTGCGGCGGATGAGGTCAAATCTGCAGTGAAAAAGGCGTCGGGGTTCAACTTCGCGACGCCGGAGGAAAAGGGGGCGTTCGAGGACTGCAAGGTGCTGTTGGAAGACGCTGTGGAGGAATTGGAGATGTCTATGAGCGAAGTGAGCAAGAAGAATATGGGAAAGCTGACGGCGAAAACGACGCCGGATCTGAATAACTGGCTTAGTGCGGTGATGTCGTATCATGAAACTTGTGTTGATGGGTTCCCAGAGGGGAAGATGAGGACAGAAATGGAGAAGGCAGTGAAGGCTGGAAAGGAACTCACCAGTAATTCCTTGGCGATGATATCGCAGGTGGCTTCCTTCTTCTCCACGTTCGAGATGCCTGAGGGAGCTGCAACACGACGTCGTCTCATGGCCAATGATGGGGTGCCAACTTGGATGGATAGCAATGAGCGAAGGATGTTGAAGGGCGCTTCTGCTGGGGTTAAGCCCAAGCCTAACGTTGTGGTCGCCAAAGATGGGTCTGGAGATTTCAAAACTATTAATGAAGCCTTGGCCAAGATGCCTGCCAAATATGATGGACGGTATGTGATCTATGTGAAGGAAGGAATCTACGAAGAGACGGTGGTGATTACGAAAAAGATGGCGAATGTTACAATGTATGGAGATGGTTCTCAAAAGAGCATGATAAGTGGGAGCAAGAACTTTGTGGATGGAGTCAGAACCTTCCAAACCGCAACATTTGTGGCACTTGGAGAGGGCTTCTTGGGGCAAGGCATGGGATTCAGAAACACAGCGGGTCCTGAAAAGCACCAAGCCGTAGCAGCGAGAGTCCAAGCAGACCGAGCCATATTTGTGAACTGCCGGTTCGAGGGGTACCAGGACACGTTATACGCCCAAGCCCATCGCCAGTTCTATAGAAGCTGTCTGATAACAGGCACCATCGACTTCATCTTCGGTGACGCCGCTGCCATTTTCCAAAACTGCAACATGATGCTCAGAAAGCCCTTAGACAACCAACAGAACATAGTCACAGCACAGGGCAGGACTGACAAGCATGAAACCACAGGCATAGTCCTCCAAAACTGCAAAATTTTGCCCGACAAGACGTTGGAGCCTGTGAAGTCCCAATTCAAAAGCTACTTGGGGAGGCCTTGGAAAGAGTTCTCTAGAACCATTGTAATGGAGTCCACCATTGAAGATATCATTCATCCCGATGGCTGGATGCCTTGGGAAGGAGATTTTGCACTCAAAACCTTGTACTATGCTGAATTTAACAACCAAGGCCCTGGGGCTAAGACCGATGCCAGGGTCAAATGGCCCGGGTACAAGGTGATTGATAAGGACGAGGCTGCAAAGTTTACCATAGGAACTTTTCTAGAGCTGGATTGGATCGAGAGCTCCTCCGCTCCTGTTCATGTCGGCCTATTTTGA 1785 50.53 MVFQDFDQISERRRAERARKFRKRVTIAVVSASVILLLVAAAVFVQVSSSSKSTTKNGDSKSSGNSKQPVPPDTKQVSRIEKMITMICNSTDYKGKCESTLKDGVHTDPDSSDPKDLIKLAISAAADEVKSAVKKASGFNFATPEEKGAFEDCKVLLEDAVEELEMSMSEVSKKNMGKLTAKTTPDLNNWLSAVMSYHETCVDGFPEGKMRTEMEKAVKAGKELTSNSLAMISQVASFFSTFEMPEGAATRRRLMANDGVPTWMDSNERRMLKGASAGVKPKPNVVVAKDGSGDFKTINEALAKMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGSKNFVDGVRTFQTATFVALGEGFLGQGMGFRNTAGPEKHQAVAARVQADRAIFVNCRFEGYQDTLYAQAHRQFYRSCLITGTIDFIFGDAAAIFQNCNMMLRKPLDNQQNIVTAQGRTDKHETTGIVLQNCKILPDKTLEPVKSQFKSYLGRPWKEFSRTIVMESTIEDIIHPDGWMPWEGDFALKTLYYAEFNNQGPGAKTDARVKWPGYKVIDKDEAAKFTIGTFLELDWIESSSAPVHVGLF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 603102 605109 + CmPI595203_11g000150.1 Cmu11g0015 428537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0015 594 Gene3D - 278 593 IPR012334 -
Cmu11g0015 594 Pfam Pectinesterase 284 578 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu11g0015 594 Pfam Plant invertase/pectin methylesterase inhibitor 83 231 IPR006501 GO:0004857(InterPro)
Cmu11g0015 594 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 82 235 IPR035513 -
Cmu11g0015 594 CDD PMEI-like_3 87 237 - -
Cmu11g0015 594 NCBIfam pectinesterase inhibitor domain 81 235 IPR006501 GO:0004857(InterPro)
Cmu11g0015 594 PANTHER PECTINESTERASE 26 584 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu11g0015 594 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Cmu11g0015 594 FunFam Pectinesterase 80 236 - -
Cmu11g0015 594 MobiDBLite consensus disorder prediction 51 73 - -
Cmu11g0015 594 SUPERFAMILY Pectin lyase-like 280 578 IPR011050 -
Cmu11g0015 594 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 236 IPR035513 -
Cmu11g0015 594 Coils Coil 154 174 - -
Cmu11g0015 594 MobiDBLite consensus disorder prediction 51 76 - -
Cmu11g0015 594 SMART PMEI_2 79 231 IPR006501 GO:0004857(InterPro)
Cmu11g0015 594 FunFam Pectinesterase 278 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0689 Cmu-Chr1:7783821 Cmu11g0015 Cmu-Chr11:603102 2.60E-142 dispersed
Cmu01g0690 Cmu-Chr1:7790371 Cmu11g0015 Cmu-Chr11:603102 9.60E-137 dispersed
Cmu05g0692 Cmu-Chr5:5953726 Cmu11g0015 Cmu-Chr11:603102 1.80E-135 dispersed
Cmu09g0840 Cmu-Chr9:8206021 Cmu11g0015 Cmu-Chr11:603102 2.30E-91 dispersed
Cmu10g0854 Cmu-Chr10:588442 Cmu11g0015 Cmu-Chr11:603102 1.70E-100 dispersed
Cmu11g0015 Cmu-Chr11:603102 Cmu11g1453 Cmu-Chr11:26756742 1.60E-81 dispersed
Cmu11g0015 Cmu-Chr11:603102 Cmu06g0482 Cmu-Chr6:5397785 2.00E-137 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0015 - - - 0.0