Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0026 ATGTCCTTTTCAGCTGTCTCAAATCTTCCCTCAGGAGGACCCCATTCAGGGCCCTCTTCCGATGCATTGTATAGGGAATTATGGCATGCTTGTGCAGGACCACTTGTCACCCTTCCACGCCAAGATGAACGAGTATACTACTTTCCTCAGGGTCACATGGAACAGCTGGAAGCCTCGATGCATCAAGGTTTGGAGCAACAAATGCCTTCATTCAACCTTCCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCCGACACTGATGAAGTTTATGCTCAGATAACTCTATTACCAGAAAGCAATCAAAGTGAAGTAACGAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTTCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGGCATGCGGATGACTGTCTGCCACCTTTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTCGCGACTGATTTACATGGGAGTCAATGGCATTTTAGGCACATTTTTCGAGGTCAACCAAGGCGTCATTTGCTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAAAAGCTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAACTAAACAATATGCCATCTTCTGTTATATCAAGTCACAGTATGCATCTTGGAGTTTTAGCCACTGCTTCTCATGCTATTGCAACTGGAACACTCTTTTCTGTCTTTTACAAGCCAAGGACAAGCAGGTCTACGTTTCTTGTAAGTCTGAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGCGAGGAAGTACCTGAAAGAAGTTTTAGCGGAACAATTGTTGGTCTTGGAGATAATGCGTCACCTGGATGGGCGAATTCTGAGTGGCGATCGTTAAAGGTGCAATGGGATGAACCTTCATCTATCTTGCGTCCAGATAAGGTGTCTGCTTGGGAATTGGAGCCACTTGTTGCTTCTAACCCTCTAAGCACTCAGCCTACACAGAGGAACAAGCGTCCACGGCCTACTGTTTTGCCTTCATCTTCGCCAGATGCAACTGTACTTGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTCTCATATACTGAGCCACAGCGCGGAAGGGACCTATATTCATCACCGAAGTTCAGTACTGCTGCTTCAAATTCACTTGGTTTTAATGCGAATGGTTCTCTTGGTGCAGTGTCCAGCAACACCTACTGGTCTAATACCAATAGGGTGGAAAATATTATGGACACTTCATCTCATGTAGCAAACAGGGAACCCATTGAAAAGAAACAGAACACTAGAAATGGATGCAGGCTCTTTGGTATCCAGCTTCTTGGAAATTCTAATGTAGACGAAGCTTCTCCTATTTCAACGCCTAAAATGGTCGGTGAGGATAGGCTGGTTCCACCTGTAGACTCAGAATTTGACCAGCATTCTGAACCATCAAACATTCCCCGATCAGATATTCCTTCAGTAAGCTGTGATGCTGATAAATCGTGCCTGATCTCCCCATTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCACATGCAAGGAATTGCTGTTGGGAGGGCTGTTGATTTAACCCGGTTCAATCAATATGATGATCTACTCAGGAAATTGGAGGAGATGTTTGACATAGAGGGTGAGCTCTGTGGCTCTTTAAAGAAATGGCAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAACGAGTTCTGCAGCATGGTAAGGAAGATATTCATTTACACAACAGAAGAAGTGAAGAGACTCTCGCCCAAGATAAAACTCCCACTGGGTGGAGATGGAAAGCTCTGCAAACCAGATTCCGATACAATTGCCAACCACACGGAGGATCAATCGTCCATCGTGGGATCAGATTGCTGA 2037 45.07 MSFSAVSNLPSGGPHSGPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGSQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSEWRSLKVQWDEPSSILRPDKVSAWELEPLVASNPLSTQPTQRNKRPRPTVLPSSSPDATVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNANGSLGAVSSNTYWSNTNRVENIMDTSSHVANREPIEKKQNTRNGCRLFGIQLLGNSNVDEASPISTPKMVGEDRLVPPVDSEFDQHSEPSNIPRSDIPSVSCDADKSCLISPLESQSRQIRSCTKVHMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSLKKWQVVYTDDEDDMMMVGDDPWNEFCSMVRKIFIYTTEEVKRLSPKIKLPLGGDGKLCKPDSDTIANHTEDQSSIVGSDC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 729583 737718 - CmPI595203_11g000260.1 Cmu11g0026 428548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0026 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
Cmu11g0026 678 Gene3D - 125 230 IPR015300 -
Cmu11g0026 678 MobiDBLite consensus disorder prediction 362 386 - -
Cmu11g0026 678 FunFam Auxin response factor 548 642 - -
Cmu11g0026 678 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Cmu11g0026 678 FunFam Auxin response factor 126 230 - -
Cmu11g0026 678 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677(InterPro)
Cmu11g0026 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 643 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g0026 678 FunFam Auxin response factor 291 363 - -
Cmu11g0026 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
Cmu11g0026 678 Gene3D - 291 364 - -
Cmu11g0026 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
Cmu11g0026 678 Pfam Auxin response factor 254 336 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g0026 678 Pfam AUX/IAA family 552 644 IPR033389 -
Cmu11g0026 678 SUPERFAMILY CAD & PB1 domains 555 630 - -
Cmu11g0026 678 ProSiteProfiles PB1 domain profile. 553 646 IPR053793 -
Cmu11g0026 678 Gene3D - 548 642 - -
Cmu11g0026 678 MobiDBLite consensus disorder prediction 362 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2432 Cmu-Chr1:36248281 Cmu11g0026 Cmu-Chr11:729583 5.90E-14 dispersed
Cmu09g0906 Cmu-Chr9:8976003 Cmu11g0026 Cmu-Chr11:729583 2.50E-179 dispersed
Cmu11g0026 Cmu-Chr11:729583 Cmu11g1159 Cmu-Chr11:22023493 3.10E-17 dispersed
Cmu11g0026 Cmu-Chr11:729583 Cmu02g2094 Cmu-Chr2:34577424 4.50E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7088 PF02309 AUX_IAA 1.30E-11 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0026 K14486 - csv:101204612 1315.06