Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0043 TCAGTGTTTGTATTTTCACTTTGCAGTAAAAGTCCACAAAGATTTATGGAGGGAGGACAAGACGATGCCGGAAATGGGTTCACGGCGGCCACTGGATCAAATCATCCGAGACCCGAGGCGGCAGCTCCACCACCGGAAGGTGGTGGTCCGGTGGGTTCTTCAGCGGTGGCAGGAAAGAAGAAGAGGGGGAGACCGAGGAAGTATGGGCCGGACGGGAAGTTGAATGTGGCGGCACTGTCGCCGAAGCCGATATCGGCGTCGGCACCGGCACCGGCGGCAGTTATTGATTTCTCGGCGGAGAAACGTGGAAAAGTGCGGCCGGCGACTTCCTTGACCAAAACCAAATATGAAGTGGAGAATTTAGGTGAATGGGTACCTTGTTCTGTTGGTGCTAATTTCACACCACATATCATCACAGTAAGCACTGGCGAGGATGTTACGATGAAGGTTCTCTCATTTTCTCAACAAGGGCCTCGAGCAATCTGCATTCTCTCTGCTAACGGTGTGATTTCGAGCGTCACGCTCCGTCAACCCGACTCCTCTGGAGGAACATTAACATATGAGGGTCGTTTTGAGATATTGTCATTGTCGGGATCGTTCATGCCGAGTGACAACGCAGGAACAAAGAGCAGAATGGGTGGAATGAGTGTCTCCTTAGCAAGTCCAGATGGACGAGTTGTTGGTGGTGGAGTTGCCGGTTTGTTAGTAGCTGCAAGTCCAGTTCAAGTGGTTGTAGGAAGCTTTTTATCTGGAAACCAACATGAGCAAAAGTCGAAAAAATCAAAACCCGACGTCGTATTACCGGTTTCTGCTTTTCCAATCTCTAGTGTGGAACCAAAATCATACAAGACGACGACGACGACAACGACATCTTCGTTTCGTGCTGAAACATGGTCACCTTTAGTTCCAGATTTAAGAAGCCAGCCAACTGATATCAATGTATCATTAACAAGTGGCTAA 960 49.17 SVFVFSLCSKSPQRFMEGGQDDAGNGFTAATGSNHPRPEAAAPPPEGGGPVGSSAVAGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAPAAVIDFSAEKRGKVRPATSLTKTKYEVENLGEWVPCSVGANFTPHIITVSTGEDVTMKVLSFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNAGTKSRMGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKSKKSKPDVVLPVSAFPISSVEPKSYKTTTTTTTSSFRAETWSPLVPDLRSQPTDINVSLTSG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 906003 908838 - CmPI595203_11g000430.1 Cmu11g0043 428565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0043 319 Gene3D - 135 266 - -
Cmu11g0043 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 255 - -
Cmu11g0043 319 ProSiteProfiles PPC domain profile profile. 130 275 IPR005175 -
Cmu11g0043 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 282 IPR039605 GO:0003680(InterPro)
Cmu11g0043 319 FunFam AT-hook motif nuclear-localized protein 1-like 135 265 - -
Cmu11g0043 319 MobiDBLite consensus disorder prediction 13 72 - -
Cmu11g0043 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 135 248 IPR005175 -
Cmu11g0043 319 CDD DUF296 134 225 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0243 Cmu-Chr5:2072941 Cmu11g0043 Cmu-Chr11:906003 3.20E-79 dispersed
Cmu05g0837 Cmu-Chr5:7562881 Cmu11g0043 Cmu-Chr11:906003 5.00E-67 dispersed
Cmu09g1154 Cmu-Chr9:12445836 Cmu11g0043 Cmu-Chr11:906003 1.50E-34 dispersed
Cmu11g0043 Cmu-Chr11:906003 Cmu11g1886 Cmu-Chr11:30893192 1.50E-49 dispersed
Cmu11g0043 Cmu-Chr11:906003 Cmu01g0339 Cmu-Chr1:3560221 1.30E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0043 - - - 0.0