Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0072 ATGGCTGCATCTTCTTCCTCAGTTCCACTTTTTGGAGTTCGAGAAGAAGGGCAGATGAGAGGTCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCTCCCTCTAATTCTTCCACTCCTCCAAATCCTCAACAACCCCAAAAGAAAAAGAGAAACCAACCAGGAACTCCAAATCCAGATGCGGAAGTGATAGCGTTGAGTCCGAAGACGTTAATGGCAACAAACAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAACAAAATCTACAGCTGCATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAAAAGCACAAAAGAGCCAAAAAGAAAAGTGTATTTATGCCCAGAACCCACATGCGTACACCACGACCCATCAAGAGCACTTGGAGATTTAACAGGCATCAAGAAACACTACTCGCGAAAGCACGGCGAGAAGAAATGGAAGTGCGATAAATGCTCTAAACGTTACGCCGTTCAATCCGACTGGAAAGCCCATTCCAAAACCTGTGGCACCAGAGAATATCGTTGCGATTGTGGTACTCTCTTCTCCAGACGGGACAGTTTTATTACCCATAGAGCTTTTTGTGATGCATTGGCTCAAGAAAGTGCAAGACATCCTCCAAATTTAGGGTCTGCCATTGGAAGCCATTTATATGGAGGTAATAGCAATGTGGGTTTGACATTATCACAAGTCCCTCAAATTTCTTCTCTTCAAGACCATCCCAATATCCCCCAATCCCCTCACGACGTCCTCCGTCTCGGTGGTGGCCGAACCGGGCAATTCACTCATCTCCTCCCTCCTTCTATTGGCTCTTCCTTCCGACCCCCGCCACAACAAGCAATGCCGTCGTCGAATGCCGCCGCGTTCTTCCTTTCGGACCAAACTAACCAAAGTAGCTTCCATGAAGATCATCATCAAAGCCAATCGCAACAAGGGTTGTTTGGAAACAAAGCCTTTCATGGGCTAATGCAATTCCCTTCTGATATCCAAACCCATGCAAGTAACAACAACAACAATTCTGCCTCAAATCTCTTCAATTTAGGCTTCATTTCAAATCCAACTGGTGATAATACTTCCAATATGAACAGTAACAACGACACCAACACTAACAATAGCAACAGCAGCAGCAACAACAACAACAATCTTCCATCCTCTTTGCTAAACCAATTCAATGGAACAAACAATGGCAACAATGACGGTCCTGCATCTAATATTTTCGCCGTTAACATAATGGGAGATCAAATCAATTCAGCTGCAGTTCCATCTCTCTACAGCACGGCCGCCACGGGAGGATGTAGTAGCGGTACAAGCGGAGGAGCAATCCCACATATGTCAGCGACAGCACTTCTCCAAAAGGCAGCACAATTAGGCTCAACAACGTCGAGTAGCAACACTACAGCAACGTTGCTAAGGACATTTGGTAGCTCCTCAAGCTCAGGCGGGAAGGCGACGGATAGAACACTATTCCCACCAAGCTACGGTGGAGTAGTGTTCGGCGAGAACGAGAGCAATCTCCAGGATTTGATGAACTCGTTCACGACGGGGAGCTCGGGGAGCGGGATGTTTGGGAGCGGGATGAGCTCATTCGGTGGATTTGAAGGGAGTAATCGAAACAATATGGAAAGTATGGAGGATCCAACGAAGTTACAACAGAATTTAAGCACAGTGAGTGTGGGAGGTGGGGCAGATAGGTTAACAAGAGACTTCTTAGGGGTTGGACAGGTTTTGAGAAGTATGAGCGGTGGCGGCGGTTATTCACAAAGAGAACATAAACAGCCACCGCAAGGGATGGTTTTGGAGGTGAAGAAGAGAAGAAGGAAAACAAGTACAGACAGAAACAGATTTTTCAAATGCAACAAATATCAATGCCTGCCAACTTCAATCAGTGATCCAAAAATATCAGTGGATGGTGGAAGAATTCAAAGCTTTATACATTCTTTAGATTGA 1965 45.8 MAASSSSVPLFGVREEGQMRGQQQQQQQPPPPPPSNSSTPPNPQQPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPPNLGSAIGSHLYGGNSNVGLTLSQVPQISSLQDHPNIPQSPHDVLRLGGGRTGQFTHLLPPSIGSSFRPPPQQAMPSSNAAAFFLSDQTNQSSFHEDHHQSQSQQGLFGNKAFHGLMQFPSDIQTHASNNNNNSASNLFNLGFISNPTGDNTSNMNSNNDTNTNNSNSSSNNNNNLPSSLLNQFNGTNNGNNDGPASNIFAVNIMGDQINSAAVPSLYSTAATGGCSSGTSGGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRTFGSSSSSGGKATDRTLFPPSYGGVVFGENESNLQDLMNSFTTGSSGSGMFGSGMSSFGGFEGSNRNNMESMEDPTKLQQNLSTVSVGGGADRLTRDFLGVGQVLRSMSGGGGYSQREHKQPPQGMVLEVKKRRRKTSTDRNRFFKCNKYQCLPTSISDPKISVDGGRIQSFIHSLD 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1289319 1293552 - CmPI595203_11g000720.1 Cmu11g0072 428594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0072 654 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Cmu11g0072 654 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 152 176 - -
Cmu11g0072 654 SMART c2h2final6 118 148 IPR013087 -
Cmu11g0072 654 SMART c2h2final6 77 99 IPR013087 -
Cmu11g0072 654 SMART c2h2final6 153 173 IPR013087 -
Cmu11g0072 654 Gene3D Classic Zinc Finger 56 125 - -
Cmu11g0072 654 Pfam Zinc-finger of C2H2 type 77 99 IPR013087 -
Cmu11g0072 654 FunFam protein indeterminate-domain 5, chloroplastic-like 131 210 - -
Cmu11g0072 654 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Cmu11g0072 654 Gene3D Classic Zinc Finger 131 210 - -
Cmu11g0072 654 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 179 214 - -
Cmu11g0072 654 MobiDBLite consensus disorder prediction 26 41 - -
Cmu11g0072 654 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 593 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu11g0072 654 MobiDBLite consensus disorder prediction 361 404 - -
Cmu11g0072 654 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 114 148 - -
Cmu11g0072 654 MobiDBLite consensus disorder prediction 1 62 - -
Cmu11g0072 654 SUPERFAMILY beta-beta-alpha zinc fingers 76 173 IPR036236 -
Cmu11g0072 654 FunFam protein indeterminate-domain 12-like 56 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0072 Cmu-Chr11:1289319 Cmu10g2759 Cmu-Chr10:34202717 1.30E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7093 PF12171 zf-C2H2_jaz 4.10E-05 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0072 K25870 - csv:116401647 960.288