Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0088 ATGTGCCATTCCACCGACTCCACGGCCTTACAGGACTTCCGCCGCAGTTTTAGTTCTCAAATCGATGGATTGCACACCAACTGTTCGACGAATTGCTGCACTTGTACTGGCGTCACTTGTGATTCTTCTGGGAGGGTTGTGAAGATTGAACTTGGTGGGAGAAAGCTAGTTGGTCGACTACCAATCTCAATTGCAAGATTGGAACGCCTCAGAGTTCTTAATTTGTCCTCTAATTCCCTCACTGGGTCTATTCCTTTGGCTCTGTTTCAGCTCCCATACTTGGAAGTTCTTGATCTTAGCTTCAATCAGTTCTTGGGAAGCATCTCAACAGGTAACATCGATTTGCCTTCCCTTCGGATTCTTAATGTTTCTCATAATTCCTTCAACGGTGTTCTTCCATTTGGGGTTTGTGTCAACTCCTCTAGAATTGAGATTCTGAATCTGGGTTTCAATGATTTCGTTGGTATGTTTCCTTTTCAACTTGCTGAATGTGTTTCCTTGAAGAGACTGCATCTGGAATCGAATTTTATCAGTGGTAGGATACCTGATGAGGTTTTTGGATTGAGGAAATTGACCCATTTGTGTGTTCAGAACAACAAGCTTTCTGGTTCTTTGAGTAGTGTTGTTGGGAATCTAACAAGCCTTGTTCGGTTGGATTTGTCATCTAATGAGTTTTTTGGGGAAATTCCTGATGTTTTTTACGACTCTGTGAATTTGAGTTACTTTGTTGCTGAGTCTAATAGGTTTAGTGGGAATATTCCCAATTCCTTGTCACACTCTGCTTCACTTACTGTCCTAAATTTGAGGAACAATTCAATAGGGGGAACTCTTGATCTTAATTGTACAGCAATGAGGAGCCTGGTTACACTTGATTTAGGCTCTAATAGGTTTCATGGATCTATACCTAGTAATCTTCCCTCTTGTACCAAACTGAGAAGCATAAACCTTGCTAGGAACAAGCTTGGCGGTCAGGTCCCTGAGAGCTTTAGACACTTTCAGAGCCTATCATATTTATCACTTACGAACACGAGCATTGTTAATGTTTCATCTGCTCTTAATGTCTTGCAACATTGTCAAAATTTGAGAACTGTGGTTCTAACCTTTAACTTCCATGGTGAAGTGTTGGGGGATGATCCTAACTTGAATTTCAACAGCCTCCAAGTTTTTATAATTGCTAATTGTGGATTGAAGGGAATGATACCCCAGTGGTTGAGAGGTTCTAATAAGTTGCAGATGTTGGATTTGTCATGGAACCGTCTTGGAGGAAATATTCCATCCTGGTTTGGAGAGTTTCAGTTCTTGTTTTACTTGGATTTATCTAATAATTCATTCATCGGAGGTATCCCAAAAGAGATGACTGAAATGCAGAGTTACATTGACAGAAACTTCTTGCTTGATGAAACTGCCTCACCAGACTTTTCTCTTTTCGTGAAAAGAAATGGAACTGGATTGCAGTATAATCAATTATGGAGACTTCCACCAACTTTGAACCTCAGTCTCAACAATCTCAGTGGACAAATCTGGCCAGAGTTTGGAAATCTTAAGGAGATTCTAGTTCTTGATTTGAAAATCAACAGTTTGTCAGGATCAATTCCGAGCAGCCTCTCTGGGATGGTTAATTTAGAAACTCTAGATCTTTCTCACAACAATCTTTCAGGAATAATTCCACCTTCACTGCAAAAGCTCAATTTTTTGTCCAAGTTCAGTGTTGCATACAATCAATTACATGGGACGATTCTTAAAGGAGGTCAGTTTCATACCTTTGGTAACTCTAGCTTTGAAGGAAACAATTTTTGTGTCCAAGACGACCTCTGTGCATCAATTGACCGAGATCCTCTCAGAGTATCCCGCAAATCAAGAACGGTCAAGGGGTCTCTTATAGGTATAATTCTCGGTATTATCTTTGGAATCATTTTTCTTGCAACACTTGTAGTTGTGTTTATGCTTCGGACACCACGGGGAAGAGTTGGAGATCCTGAAAACGAAGTGTCTAACATTGACAATAATGACTCGGAGGAAGTCAAGGCAGGATTGGTAGTTTTTTTCCAAAACAACAACAATGGAAGTCTCTCGCTGGATGATATTTTGAAATCGACGAATGACTTTGATCAAGAAAATATCATTGGATGTGGGGGTTTTGGTTTAGTTTACAAAGCCACCCTTCCTGATGGTAGAAAGGTCGCTATAAAACGGTTGTCTGGCGATTGTGGTCAAATGGACAGAGAATTTCAAGCAGAAATCGAAACGCTTTCACGTGCTCAGCATCCAAATCTTGTTCTTCTTCAGGGTTATTGTATGTATAAGAATGACAGGCTTTTGATTTATTCGTACATGGAGAATGGTAGCTTAGATTACTGGTTACATGAAAAACCTGATGGCCCATCTTGCCTCGACTGGGATACCAGACTGCAGATTGCCCGAGGGGCTGCTGGGGGGCTGGCTTATTTGCATCAATCCTGTGAACCCCATATCCTCCATCGAGATATAAAGTCGAGTAACATTCTTTTAGACGAAAATTTTAGAGCTCATTTAGCTGATTTTGGTCTTGCTAGACTTATTCTTCCCTATGATACCCACGTAACAACCGATCTTGTCGGTACCTTGGGCTACATTCCACCCGAGTACGGACAATCCTCAGTCGCGACCTACAAAGGGGATGTATACAGTTTTGGAGTTGTTTTATTAGAGCTTTTGACTGGTAAAAGGCCAATCGATATGTGCAGACCGAAAGGACTTCGAGACTTGATCTCTTGGGTGTTCCAAATGAGGAAAGACACAAAAGTAAGTGAAGTGTTCGACCCATTAGTATACGACAAGAAGAATGAGACATCGATGGCCGAAGTTCTTGATATAGCATGTCTTTGCTTATGTAAGGAACCTAAAGAGAGGCCTTCTACTCAACAGCTAGTTTCTTGGCTTGATAAAGGCAGCCGCCGCCGGTGGGTAATTTCGATACAGGGTTTTTCAGCTATGGCGCCTAAAGCTGACAGCACCAAAAATGCTGATCCCAGAGCTCAAGCCCTGAAGACTGCCAAGGCAGTCAAGTCTGGGCCAACTTTCAAGAAGAAGGCTAAGAAAATCAGGACGTCGGTCACATTCCATCGCCCGAAAACATTGAAGAAGGATAGGAATCCCAAGTATCCTCGAATCAGTGTGACTCCTAGGAACAAGTTGGATCAATATCAAATTCTTAAATATCCACTAACCACTGAGTCTGCGATGAAGAAAATTGAGGATAATAACACCCTTGTTTTTATTGTCGATATTCGTGCTGACAAGAAAAAGATTAAAGATGCGGTGAAGAAGATGTATGACATTCAGACCAAGAAAGTCAACACTCTAATCAGGCCTGATGGAACAAAGAAGGCATACGTTAGGTTAACCCCAGACTACGACGCTTTGGACGTGGCGAACAAGATTGGAATTATCTAA 3432 41.43 MCHSTDSTALQDFRRSFSSQIDGLHTNCSTNCCTCTGVTCDSSGRVVKIELGGRKLVGRLPISIARLERLRVLNLSSNSLTGSIPLALFQLPYLEVLDLSFNQFLGSISTGNIDLPSLRILNVSHNSFNGVLPFGVCVNSSRIEILNLGFNDFVGMFPFQLAECVSLKRLHLESNFISGRIPDEVFGLRKLTHLCVQNNKLSGSLSSVVGNLTSLVRLDLSSNEFFGEIPDVFYDSVNLSYFVAESNRFSGNIPNSLSHSASLTVLNLRNNSIGGTLDLNCTAMRSLVTLDLGSNRFHGSIPSNLPSCTKLRSINLARNKLGGQVPESFRHFQSLSYLSLTNTSIVNVSSALNVLQHCQNLRTVVLTFNFHGEVLGDDPNLNFNSLQVFIIANCGLKGMIPQWLRGSNKLQMLDLSWNRLGGNIPSWFGEFQFLFYLDLSNNSFIGGIPKEMTEMQSYIDRNFLLDETASPDFSLFVKRNGTGLQYNQLWRLPPTLNLSLNNLSGQIWPEFGNLKEILVLDLKINSLSGSIPSSLSGMVNLETLDLSHNNLSGIIPPSLQKLNFLSKFSVAYNQLHGTILKGGQFHTFGNSSFEGNNFCVQDDLCASIDRDPLRVSRKSRTVKGSLIGIILGIIFGIIFLATLVVVFMLRTPRGRVGDPENEVSNIDNNDSEEVKAGLVVFFQNNNNGSLSLDDILKSTNDFDQENIIGCGGFGLVYKATLPDGRKVAIKRLSGDCGQMDREFQAEIETLSRAQHPNLVLLQGYCMYKNDRLLIYSYMENGSLDYWLHEKPDGPSCLDWDTRLQIARGAAGGLAYLHQSCEPHILHRDIKSSNILLDENFRAHLADFGLARLILPYDTHVTTDLVGTLGYIPPEYGQSSVATYKGDVYSFGVVLLELLTGKRPIDMCRPKGLRDLISWVFQMRKDTKVSEVFDPLVYDKKNETSMAEVLDIACLCLCKEPKERPSTQQLVSWLDKGSRRRWVISIQGFSAMAPKADSTKNADPRAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1416993 1425556 - CmPI595203_11g000880.1 Cmu11g0088 428610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0088 1143 SMART serkin_6 702 973 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0088 1143 Pfam Protein kinase domain 703 970 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0088 1143 Gene3D Ribonuclease Inhibitor 261 611 IPR032675 -
Cmu11g0088 1143 Gene3D Ribonuclease Inhibitor 137 260 IPR032675 -
Cmu11g0088 1143 FunFam Leucine-rich repeat receptor-like protein kinase 778 982 - -
Cmu11g0088 1143 SUPERFAMILY RNI-like 141 449 - -
Cmu11g0088 1143 Pfam Leucine rich repeat 69 127 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 Pfam Leucine rich repeat 285 345 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524(InterPro)
Cmu11g0088 1143 FunFam Tyrosine-sulfated glycopeptide receptor 1 281 610 - -
Cmu11g0088 1143 Pfam Leucine Rich Repeat 434 452 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 Pfam Leucine Rich Repeat 409 430 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 Pfam Leucine Rich Repeat 540 562 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 SUPERFAMILY Protein kinase-like (PK-like) 686 973 IPR011009 -
Cmu11g0088 1143 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0088 1143 SUPERFAMILY L domain-like 484 599 - -
Cmu11g0088 1143 Gene3D - 1024 1143 IPR012677 -
Cmu11g0088 1143 PRINTS Leucine-rich repeat signature 70 83 - -
Cmu11g0088 1143 PRINTS Leucine-rich repeat signature 538 551 - -
Cmu11g0088 1143 FunFam 60S ribosomal protein L23a 1024 1143 - -
Cmu11g0088 1143 Gene3D Transferase(Phosphotransferase) domain 1 778 984 - -
Cmu11g0088 1143 ProSiteProfiles Protein kinase domain profile. 702 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0088 1143 Gene3D Ribonuclease Inhibitor 3 136 IPR032675 -
Cmu11g0088 1143 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1061 1136 IPR012678 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu11g0088 1143 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515(InterPro)
Cmu11g0088 1143 PANTHER RECEPTOR-LIKE PROTEIN 55 354 972 - -
Cmu11g0088 1143 Gene3D Phosphorylase Kinase; domain 1 662 777 - -
Cmu11g0088 1143 Pfam Ribosomal protein L23 1062 1123 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu11g0088 1143 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 182 277 - -
Cmu11g0088 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 664 777 - -
Cmu11g0088 1143 SMART LRR_typ_2 67 91 IPR003591 -
Cmu11g0088 1143 SMART LRR_typ_2 115 139 IPR003591 -
Cmu11g0088 1143 SMART LRR_typ_2 188 211 IPR003591 -
Cmu11g0088 1143 SMART LRR_typ_2 212 235 IPR003591 -
Cmu11g0088 1143 SMART LRR_typ_2 538 561 IPR003591 -
Cmu11g0088 1143 SMART LRR_typ_2 284 308 IPR003591 -
Cmu11g0088 1143 Hamap Large ribosomal subunit protein uL23 [rplW]. 1063 1143 IPR013025 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Cmu11g0088 1143 Pfam Ribosomal protein L23, N-terminal domain 1004 1052 IPR005633 -
Cmu11g0088 1143 ProSitePatterns Ribosomal protein L23 signature. 1121 1136 IPR001014 GO:0019843(InterPro)
Cmu11g0088 1143 SUPERFAMILY L domain-like 44 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0678 Cmu-Chr1:7693284 Cmu11g0088 Cmu-Chr11:1416993 7.00E-36 dispersed
Cmu05g0896 Cmu-Chr5:8162296 Cmu11g0088 Cmu-Chr11:1416993 2.70E-81 dispersed
Cmu07g0354 Cmu-Chr7:3436057 Cmu11g0088 Cmu-Chr11:1416993 3.30E-76 dispersed
Cmu08g0824 Cmu-Chr8:20559867 Cmu11g0088 Cmu-Chr11:1416993 4.80E-63 dispersed
Cmu09g0338 Cmu-Chr9:3238215 Cmu11g0088 Cmu-Chr11:1416993 5.20E-139 dispersed
Cmu09g0764 Cmu-Chr9:7262933 Cmu11g0088 Cmu-Chr11:1416993 2.00E-61 dispersed
Cmu09g1933 Cmu-Chr9:35431447 Cmu11g0088 Cmu-Chr11:1416993 6.10E-78 dispersed
Cmu11g0088 Cmu-Chr11:1416993 Cmu11g0534 Cmu-Chr11:5829654 5.20E-73 dispersed
Cmu11g0088 Cmu-Chr11:1416993 Cmu05g1036 Cmu-Chr5:9550826 2.10E-143 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75899 PF00069 Pkinase 7.70E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0088 K27625 - csv:116404121 1645.56