Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0124 ATGGAGGACGAGGAGCATAATGGGAATGGGAGTAGCCGGTTGGCGCCGCCGCGGGGTCCAGCGGAGCACTGTGTGGAAATTGTTCATCCGGTGGTTCCGCCGCCGAGGAGAAGCTGGATACAGAAGCTGCGCAACCGGCTGAAGGAAATATTTTTTCCGGACGATCCTCTCCGGCAGTTCAAAGGGCAGTCTCCGGCGAGGAAATGGGTGATTGGAGGTCAATATATATTCCCAATTCTTCAATGGGGGCCTCACTATAATCTTAGCCTTTTTAAATCTGATGTTGTTGCTGGTCTCACCATTGCTAGCTTGGCCATACCTCAGGGTATTAGCTATGCTAAGCTTGCCAATTTGCCTCCCATTGTTGGACTTTATTCAAGCTTTGTTCCACCACTAGTATATGCTGTTCTTGGAAGCTCAAGAGATCTAGCAGTTGGACCTGTTTCAATAGCATCACTAATATTGGGTTCCATGCTGAGACAACAAGTTTCTCCCATCAAAGATCCCATTCTTTTTCTTCAGCTTGGCTTCACTTCTACCTTCTTCGCGGGTCTCTTTCAAGCTTCGCTCGGGTTTCTCAGACTTGGTTTTATAATAGATTTTTTATCGAAGGCGACTTTGATTGGATTCATGGCAGGAGCAGCCATTATTGTGTCTTTGCAACAACTTAAAGGGTTGCTTGGAATAACCCATTTCACTAAACAGATGGGTTTGATTCCTGTTTTGTCCTCAGTTTTTCATCACACTCATGAGTGGTCATGGCAGACTATACTGATGGGCTTTTGTTTCCTTCTCTTTCTTCTCCTCACAAGGCACATTAGCATGAAAAAGCCAAAATTGTTCTGGGTGTCAGCTGGAGCTCCTTTGGTGTCCGTCATTCTTTCAACCATTTTGGTCTTTGCATTCAAGGCGGATCGTCATGGCATCACCGTTATAGGAAAGTTGCAAGAAGGATTGAACCCACCTTCATGGAATATGCTTCGATTTGAAGGGTCACACCTTGGCCTTGTTATTAAGACTGGACTCGTCACCGGCATCATCTCTCTCACTGAAGGAATCGCAGTAGGGCGAACTTTTGCAGCTATAAAAGACTACCGCGTCGATGGTAACAAGGAAATGATTGCAATCGGCCTCATGAATGTCGTCGGCTCTTTCACTTCTTGCTATATCACAACAGGTGCATTTTCAAGGTCAGCGGTGAACCATAATGCGGGAGCAAAGACCGCAGTGTCGAACATCATAATGTCAGTGACGATAATGGTGACGTTGTTGTTTCTGATGCCTCTGTTTCAGTATACACCCAATCTGGTGTTGGCTGCCATCATCGTCACCGCCGTCGTCGGCCTTATCGACATCCCGGCTGCCTATGGCATTTGGAAGGTCGACAAGTTCGATTTCGTTGTGATGCTTTGTGCCTTCTTCGGCGTCATTCTCATCTCTGTTCAACATGGCCTCGCCATTGCTGTTGGCATATCAATTTTCAAGATCATCCTACAAATCACAAGGCCAAAAACAGTGATGTTGGGGAACATAGCTGGAACAGATATATATAGAAACCTTCACCATTACAAGGATGCAATGAGTGTCAAAGGCTTTCTCATTTTAAGCATTGAAGCTCCAATCAACTTTGCCAACACCACATATCTCAATGAAAGGATTTTGAGATGGATCGAAGATTATGAAGCTGATCAAGATCATATTAAGAAGGAGGACTCCAGCCTTCAGTTTGTTGTTTTAGAATTGTCAGCTGTGAGTGCTATAGACACTAGTGGAGTTTTACTCTTCAAAGACCTAAGGAGAGCATTGGAAAAGAAGGGTGTTGAGCTAGTGTTGGTGAACCCATTGGGTGAAGTTTTGGAAAAGTTGCAAAAGGCAGATGAAAATCAAGAGATTTTGAGGCCAAATAATGTATTCTTGACTGTGGGAGAGGCCATTGCTTCACTAGCAACAACAATGAAGGGACAATCCTCAACTATATAG 1980 44.8 MEDEEHNGNGSSRLAPPRGPAEHCVEIVHPVVPPPRRSWIQKLRNRLKEIFFPDDPLRQFKGQSPARKWVIGGQYIFPILQWGPHYNLSLFKSDVVAGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQQVSPIKDPILFLQLGFTSTFFAGLFQASLGFLRLGFIIDFLSKATLIGFMAGAAIIVSLQQLKGLLGITHFTKQMGLIPVLSSVFHHTHEWSWQTILMGFCFLLFLLLTRHISMKKPKLFWVSAGAPLVSVILSTILVFAFKADRHGITVIGKLQEGLNPPSWNMLRFEGSHLGLVIKTGLVTGIISLTEGIAVGRTFAAIKDYRVDGNKEMIAIGLMNVVGSFTSCYITTGAFSRSAVNHNAGAKTAVSNIIMSVTIMVTLLFLMPLFQYTPNLVLAAIIVTAVVGLIDIPAAYGIWKVDKFDFVVMLCAFFGVILISVQHGLAIAVGISIFKIILQITRPKTVMLGNIAGTDIYRNLHHYKDAMSVKGFLILSIEAPINFANTTYLNERILRWIEDYEADQDHIKKEDSSLQFVVLELSAVSAIDTSGVLLFKDLRRALEKKGVELVLVNPLGEVLEKLQKADENQEILRPNNVFLTVGEAIASLATTMKGQSSTI 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1759506 1770759 - CmPI595203_11g001240.1 Cmu11g0124 428646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0124 659 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cmu11g0124 659 CDD STAS_SulP_like_sulfate_transporter 523 641 - -
Cmu11g0124 659 ProSiteProfiles STAS domain profile. 522 648 IPR002645 -
Cmu11g0124 659 FunFam Sulfate transporter 31 502 651 - -
Cmu11g0124 659 PANTHER SULFATE TRANSPORTER 52 646 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu11g0124 659 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020(InterPro)
Cmu11g0124 659 SUPERFAMILY SpoIIaa-like 528 648 IPR036513 -
Cmu11g0124 659 Pfam STAS domain 526 644 IPR002645 -
Cmu11g0124 659 NCBIfam sulfate permease 78 643 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu11g0124 659 Gene3D STAS domain 502 651 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0698 Cmu-Chr9:6481213 Cmu11g0124 Cmu-Chr11:1759506 1.10E-208 dispersed
Cmu09g1503 Cmu-Chr9:27550222 Cmu11g0124 Cmu-Chr11:1759506 9.20E-176 dispersed
Cmu09g1932 Cmu-Chr9:35407142 Cmu11g0124 Cmu-Chr11:1759506 4.60E-92 dispersed
Cmu11g0124 Cmu-Chr11:1759506 Cmu11g1533 Cmu-Chr11:27641386 2.40E-187 dispersed
Cmu11g0124 Cmu-Chr11:1759506 Cmu09g0211 Cmu-Chr9:2173488 2.30E-230 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0124 K17471 - csv:101219163 1183.7