Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0133 ATGAAAGCTCCTCCAAATGGGTTTCTGGCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGGCCTCTCGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCACAAGGCCACAGTGAACAAGTTGCAGCATCAATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGATCTGCATGCTCCACAATGTCACATTACATGCTGATCCTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAGCAGGCAGCCTGCAGAATTCTTCTGCAAAACTCTAACAGCTAGTGACACCAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTCCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGCGGCCAACCAAAACGTCACCTTCTGACCACTGGTTGGAGTGTTTTTGTTAGCACAAAACGACTCTTTGCTGGAGACTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTCTCTTCATCAGTAATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCTGCTGCGAACAACAGTCCTTTCACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATACCTTTGGCCAAGTATAATAAAGCAATGTATACGCAAGTTTCACTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACGATTACTGGTATCAGCGACATGGATTCTGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCTAATCGAGTTTCAATATGGGAAGTTGAGCCTGTTGTGACTCCCTTTTACATATGTCCGCCTCCATTCTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTTAAGAGAGCCATGCCATGGTTTGGTGATGACTTTGGCATGAAAGATACACCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTCCTAGTGCTCTGCATGGAACTCTTACTAATGAAGACCCATCCAAATTATTGAGTTTTCAAGCACCAGTACTGTCTTCACCAAATCTCCAATTCAGCAAAGCAACTCAACAGAACCAAGCTGGCCAATTGCCTCCAACTGCGTGGTCTCAACAGCAGCAGCTGCAGCAATTATTACAAGTTCCTGCAAGCCAACAGTTACAGCAGCAGCAGTTGCCACCCCAGCAGGAACTACAGCAGCAGCAACAATTGCAGCAGCAACAACTGCAGCAGCTGCCCCAGCAGCAGCAACTCCAGTCGCAACAGCCACAACGGCAACAACAGACCTCGCAATCTGTTCTTCTGAACAACAGTGTAACTGCTGCTAACCATTTGCCAAATCCAAGTTTGCAACAACCACTTGTATACTCTCAGCTACAACAACAGCAATTGCTTGCAGGCAATATTCAATCACATCAAACTAGCCAACCATCTAATAAGAACTCATTTCAGACTACATTATCGGAAGAAACGCAGTTTCAGCCACAAATAGAGCAACAACCTAGCCTTCTTCCGAGACACCAGCAGCCGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAGCACAACAGCAGCCACAAGTTCAGCAATTTTCACAGCCAATCCCAACTGAGCAACAACTTCAATTGCAGCTGCTACAGAAGCTGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAACCATTGCTCTCCCCAGCTAGCCCACTATTACCACCTCAGCTGCTACAGCAGCAGCACGTTCATCAGCAAAACCAGCAGATGCCACCATTGCCGTTGCCCAATCAGCAGCAGTTCAGTACTAGTGGTGGCAGCTTCCAAACAGAAAAGCTTAACAGCAATGGCTTCGCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACCGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCACCTTCCACTAATAACTGCGCAGTTTCAGTATCAAACCTGCTCAATAAGAACCAACAAGGAGCAGCCACACTTGGTGGAGATTCAGTAGTTGAGCCTGCAACTAACCCGACACAGGAGCTACAGAGCAAACCTGATTTGCGGATCAAACATGAGTTTCCTAACTCAAAAGGACTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCATCTTCTTCTGGGACGTCATATTGTTTGGATGCTGGCACCATTCAGCAGACTCTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACATCCACGTAACAATATCCCTTTCAGTAATAGCATTGATGGATTGACACCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGGGGTGTGCCAAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCCTTTGGGGTTCCAAACCTGCCTTTCAAGCCTGGCTGCTCAAATGATGTCAATGTAAATGAAGCTGGAGCTTTGAGTAGTGGATTGTGGGCAAACCACAGTCAACGTATGCGTACATATACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGTATCGACGTCACTCGCTACAAAGGATATGAGGAGCTTAGGCATGATCTTGCCCGCATGTTTGGCATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGACCATGAAAATGATATACTTCTAGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGGAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGGACAGATAGTGGAAATGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCATCATTCAATCGATAA 3333 45.42 MKAPPNGFLANSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLICMLHNVTLHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVPSALHGTLTNEDPSKLLSFQAPVLSSPNLQFSKATQQNQAGQLPPTAWSQQQQLQQLLQVPASQQLQQQQLPPQQELQQQQQLQQQQLQQLPQQQQLQSQQPQRQQQTSQSVLLNNSVTAANHLPNPSLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNSFQTTLSEETQFQPQIEQQPSLLPRHQQPTQFQQAPLQLLQQSLSQRAQQQPQVQQFSQPIPTEQQLQLQLLQKLQQQQQQQQQQQPLLSPASPLLPPQLLQQQHVHQQNQQMPPLPLPNQQQFSTSGGSFQTEKLNSNGFASLGLMQSQQVPITQSHNQFKPTTAIRAYSGLTDGDAPSCSTSPSTNNCAVSVSNLLNKNQQGAATLGGDSVVEPATNPTQELQSKPDLRIKHEFPNSKGLDQLKYKGTVPDQLEASSSGTSYCLDAGTIQQTLPLPTCLDNDVQSHPRNNIPFSNSIDGLTPDTLLSRGYDSQKDLQNLLSNYGGGVPRDIETELSTAAISSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYEELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1891703 1902388 + CmPI595203_11g001330.1 Cmu11g0133 428655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0133 1110 Gene3D - 124 227 IPR015300 -
Cmu11g0133 1110 CDD B3_DNA 125 226 IPR003340 GO:0003677(InterPro)
Cmu11g0133 1110 ProSiteProfiles PB1 domain profile. 983 1076 IPR053793 -
Cmu11g0133 1110 Pfam AUX/IAA family 1029 1070 IPR033389 -
Cmu11g0133 1110 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677(InterPro)
Cmu11g0133 1110 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 1074 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g0133 1110 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677(InterPro)
Cmu11g0133 1110 Pfam Auxin response factor 252 334 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g0133 1110 Gene3D - 289 360 - -
Cmu11g0133 1110 MobiDBLite consensus disorder prediction 588 632 - -
Cmu11g0133 1110 Gene3D - 978 1072 - -
Cmu11g0133 1110 SUPERFAMILY CAD & PB1 domains 996 1061 - -
Cmu11g0133 1110 FunFam Auxin response factor 978 1072 - -
Cmu11g0133 1110 MobiDBLite consensus disorder prediction 1091 1110 - -
Cmu11g0133 1110 FunFam Auxin response factor 124 228 - -
Cmu11g0133 1110 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Cmu11g0133 1110 MobiDBLite consensus disorder prediction 702 736 - -
Cmu11g0133 1110 FunFam Auxin response factor 289 361 - -
Cmu11g0133 1110 SMART B3_2 126 228 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1895 Cmu-Chr5:28896013 Cmu11g0133 Cmu-Chr11:1891703 9.80E-174 dispersed
Cmu08g1028 Cmu-Chr8:22575057 Cmu11g0133 Cmu-Chr11:1891703 2.70E-62 dispersed
Cmu11g0133 Cmu-Chr11:1891703 Cmu11g1159 Cmu-Chr11:22023493 2.50E-245 dispersed
Cmu11g0133 Cmu-Chr11:1891703 Cmu01g2432 Cmu-Chr1:36248281 2.40E-171 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7098 PF02309 AUX_IAA 1.70E-09 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0133 K14486 - csv:101210917 1742.63