Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0143 ATGTTCTCCTCTACTGTGCCAGATCACAAAGCCAGTACTAGTCCGAGTTCTCACTTAAAGAGTTTAAAGCTCACTGTCTGGTTCAGTGATTATGGTGGCATCGTCCACAAGAGAATGATTTCGAATGGGAGAAGAAAGAAAGCGGAGAAGACTGGAATGGCGGTGAAGAAAATGAAGTGGAGATCCATTTTCTCCAGCTGCTGCGAGGTTGATTCGCAGTCGTCGGAGGTGATGAAAGTAGTGGCGGCGAATAAGCCGAGTTCCTTCCAAAGGATTTCGAAACTGGATTTGAGTAACCCTAATTCCACTCTCTCTGAAGATCTTTCCATTTCTCTCGCCGGATCTGACATCCACGCTTTCACTCTCGCCGAATTGAAGCTCATCTCTCAGACCTTTTCTTCCTCAAACTTCCTTGGAGAAGGTGGATTCGGCCCCGTCTACAAAGGATTCCTCGATGACAATCTCAGGCCTGGCTTGTCTCCTCAGCCCGTCGCTATTAAACTCCTCGATTTGGATGGAACACAAGGCCACAGAGAATGGCTGACGGAGGTGATTTTTCTAGGACAGCTTAAGCACGCTCATCTAGTGAAGCTAATTGGATATTGCTGCGAAGACGAACATAGGATGCTTGTGTATGAGTATATGCCCAGAGGAAGCTTGGAGAATCAACTTTTCAAAAAATATTCGATCCCATTGCCATGGTCGACGAGAATGAAGATCGCTCTTGGAGCTGCCAAGGGTCTGGCCTTCCTCCACGAAGCAGATAAACCAGTAATTTACCGAGATTTCAAAGCCTCCAACATACTGCTCGACTCTGATTATACCGCGAAGCTGTCTGATTTTGGACTAGCCAAAGACGGTCCAGAAGGAGACAACACGCATGTCTCGACCCGAGTAATGGGGACGCATGGATATGCTGCGCCGGAGTATATAATGACGGGTCATTTGACGGCAATGAGTGACGTGTATAGCTTCGGAGTAGTGCTTTTGGAGTTGTTGACAGGGCGGCGGTCGGTGGAGAAGAGCAGCCGTAAGAGGCAACAGAACTTGGCAGAGTGGGCGAGGCCGATGCTGAATGATCCAAGGAAGCTAAGCCGTATAATAGACCCAAGACTTGAAGGCCAATACTCGGAAATGGGAGCTCAGAAAGCAGCCACATTGGCTTACCAATGCTTGAGCCACCGCCCAAAGCAGAGGCCCACCATGAGCGCCGTCGTCAAGGTATTAGAGCCGCTTAAGGATTTCGATGACATTTCTTCAGGCACCTTCGTTTATACGGTTCTCGCCCAAAACGATCTTCACAACAAACCAACGGGAAATTCAACTTTAGAAGAAGCTAAAAAGTAA 1347 48.18 MFSSTVPDHKASTSPSSHLKSLKLTVWFSDYGGIVHKRMISNGRRKKAEKTGMAVKKMKWRSIFSSCCEVDSQSSEVMKVVAANKPSSFQRISKLDLSNPNSTLSEDLSISLAGSDIHAFTLAELKLISQTFSSSNFLGEGGFGPVYKGFLDDNLRPGLSPQPVAIKLLDLDGTQGHREWLTEVIFLGQLKHAHLVKLIGYCCEDEHRMLVYEYMPRGSLENQLFKKYSIPLPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGDNTHVSTRVMGTHGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVEKSSRKRQQNLAEWARPMLNDPRKLSRIIDPRLEGQYSEMGAQKAATLAYQCLSHRPKQRPTMSAVVKVLEPLKDFDDISSGTFVYTVLAQNDLHNKPTGNSTLEEAKK 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1964525 1970400 - CmPI595203_11g001430.1 Cmu11g0143 428665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0143 448 ProSiteProfiles Protein kinase domain profile. 132 413 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0143 448 SUPERFAMILY Protein kinase-like (PK-like) 108 410 IPR011009 -
Cmu11g0143 448 FunFam Probable serine/threonine-protein kinase PBL8 215 427 - -
Cmu11g0143 448 Gene3D Phosphorylase Kinase; domain 1 96 214 - -
Cmu11g0143 448 CDD STKc_IRAK 138 412 - -
Cmu11g0143 448 PANTHER OS01G0588500 PROTEIN-RELATED 106 413 IPR050823 -
Cmu11g0143 448 FunFam Serine/threonine-protein kinase BIK1 99 214 - -
Cmu11g0143 448 Gene3D Transferase(Phosphotransferase) domain 1 215 423 - -
Cmu11g0143 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0143 448 Pfam Protein tyrosine and serine/threonine kinase 136 409 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2062 Cmu-Chr3:29024758 Cmu11g0143 Cmu-Chr11:1964525 2.70E-119 dispersed
Cmu10g2987 Cmu-Chr10:36037587 Cmu11g0143 Cmu-Chr11:1964525 3.40E-127 dispersed
Cmu11g0143 Cmu-Chr11:1964525 Cmu11g1145 Cmu-Chr11:21663836 1.10E-111 dispersed
Cmu05g1620 Cmu-Chr5:26021709 Cmu11g0143 Cmu-Chr11:1964525 3.30E-126 transposed
Cmu07g1112 Cmu-Chr7:26166468 Cmu11g0143 Cmu-Chr11:1964525 4.30E-126 transposed
Cmu11g0143 Cmu-Chr11:1964525 Cmu03g2106 Cmu-Chr3:29484308 2.20E-168 wgd
Cmu11g0143 Cmu-Chr11:1964525 Cmu09g0100 Cmu-Chr9:1155222 5.90E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75901 PF07714 PK_Tyr_Ser-Thr 1.40E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0143 - - - 0.0