Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0156 ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA 756 47.09 MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2049808 2052310 + CmPI595203_11g001560.1 Cmu11g0156 428678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0156 251 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Cmu11g0156 251 PANTHER CPG BINDING PROTEIN 7 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu11g0156 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmu11g0156 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmu11g0156 251 Pfam PHD-finger 198 244 IPR019787 -
Cmu11g0156 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cmu11g0156 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmu11g0156 251 FunFam PHD finger alfin-like protein 190 246 - -
Cmu11g0156 251 SMART PHD_3 197 245 IPR001965 -
Cmu11g0156 251 MobiDBLite consensus disorder prediction 145 191 - -
Cmu11g0156 251 MobiDBLite consensus disorder prediction 145 164 - -
Cmu11g0156 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0469 Cmu-Chr7:5108526 Cmu11g0156 Cmu-Chr11:2049808 2.40E-47 dispersed
Cmu10g2914 Cmu-Chr10:35499727 Cmu11g0156 Cmu-Chr11:2049808 4.70E-85 dispersed
Cmu08g0935 Cmu-Chr8:21711968 Cmu11g0156 Cmu-Chr11:2049808 1.80E-108 transposed
Cmu10g1556 Cmu-Chr10:11312678 Cmu11g0156 Cmu-Chr11:2049808 4.70E-99 transposed
Cmu11g0156 Cmu-Chr11:2049808 Cmu03g2125 Cmu-Chr3:29668409 9.20E-23 wgd
Cmu11g0156 Cmu-Chr11:2049808 Cmu09g0082 Cmu-Chr9:1019680 3.40E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7100 PF12165 Alfin 9.00E-70 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0156 K26274 - rcu:8272513 460.685