Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0156 | ATGGATGGGGGAGCAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGATTTTAAAGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACTGATGTCGAAGAATTTTACCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTTTATGGGTTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCCTGGCTTCTGGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAATCGGACAGGAAACGCCTTTTTACAATGATAAATGATCTACCCACAATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTAGTTTCAAATAACAGCAGCAACAAATCCAAGATGGGCCCAAAAGGGCGAGGTTCTGAATCAAGCAAATTGTCCAAGGGGTTGGCAAAAGATGAGGATGAGGGACTGGACGAGGAAGATGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGTGGGGAGAATTATGCATCAGACGAGTTCTGGATATGTTGTGACATCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCTGAACATATCAAGCAGTATAAATGCCCCTCGTGCAGCAATAAGAGAGCACGACCCTGA | 756 | 47.09 | MDGGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQLCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSNKSKMGPKGRGSESSKLSKGLAKDEDEGLDEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 251 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2049808 | 2052310 | + | CmPI595203_11g001560.1 | Cmu11g0156 | 428678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0156 | 251 | SUPERFAMILY | FYVE/PHD zinc finger | 187 | 248 | IPR011011 | - | |
Cmu11g0156 | 251 | PANTHER | CPG BINDING PROTEIN | 7 | 250 | IPR045104 | GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cmu11g0156 | 251 | ProSitePatterns | Zinc finger PHD-type signature. | 198 | 244 | IPR019786 | - | |
Cmu11g0156 | 251 | ProSiteProfiles | Zinc finger PHD-type profile. | 195 | 247 | IPR019787 | - | |
Cmu11g0156 | 251 | Pfam | PHD-finger | 198 | 244 | IPR019787 | - | |
Cmu11g0156 | 251 | Pfam | Alfin | 11 | 138 | IPR021998 | GO:0006355(InterPro)|GO:0042393(InterPro) | |
Cmu11g0156 | 251 | CDD | PHD_AL_plant | 197 | 247 | IPR044104 | - | |
Cmu11g0156 | 251 | FunFam | PHD finger alfin-like protein | 190 | 246 | - | - | |
Cmu11g0156 | 251 | SMART | PHD_3 | 197 | 245 | IPR001965 | - | |
Cmu11g0156 | 251 | MobiDBLite | consensus disorder prediction | 145 | 191 | - | - | |
Cmu11g0156 | 251 | MobiDBLite | consensus disorder prediction | 145 | 164 | - | - | |
Cmu11g0156 | 251 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 246 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g0469 | Cmu-Chr7:5108526 | Cmu11g0156 | Cmu-Chr11:2049808 | 2.40E-47 | dispersed | |
Cmu10g2914 | Cmu-Chr10:35499727 | Cmu11g0156 | Cmu-Chr11:2049808 | 4.70E-85 | dispersed | |
Cmu08g0935 | Cmu-Chr8:21711968 | Cmu11g0156 | Cmu-Chr11:2049808 | 1.80E-108 | transposed | |
Cmu10g1556 | Cmu-Chr10:11312678 | Cmu11g0156 | Cmu-Chr11:2049808 | 4.70E-99 | transposed | |
Cmu11g0156 | Cmu-Chr11:2049808 | Cmu03g2125 | Cmu-Chr3:29668409 | 9.20E-23 | wgd | |
Cmu11g0156 | Cmu-Chr11:2049808 | Cmu09g0082 | Cmu-Chr9:1019680 | 3.40E-110 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7100 | PF12165 | Alfin | 9.00E-70 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0156 | K26274 | - | rcu:8272513 | 460.685 |