Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0162 ATGAAGAAGGATAGCTCCATGAATCCTAACTTAACGCTTCTTCTACCTCCGCCCGACGAAGTTTCCTTTGCGTTCATAACCCGGAGCGGTACTTTCACCGATGGCGATTTGCTTGTTAATAGGGACGGCGTGCGGATTGTTTCTCAGACAGACGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCTTTAGCAGATTTAGACTCGATAAAAGTCATCGGAAAAGGAAATGGTGGAGTTGTTCAATTAGTCCGACATAAATGGACGAGCCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCCGAGGAATCTTATTGTAGGCTCGTTGCTAAGGAACTAAAAATTAATCAGTTGACACAAAACCCTTTTATCGTTGTCTGTTACCAGATCTTCTATGACAATGGTGCCATTTTCATAATCTTGGAATACATGGATGGCGGATCGCTTGCAGATCTTCTAAAAAAAGTTGAAACAATCCTAGAACCTTATCTTGCAGCCATTTGTTACCAGGTATTAAAGGGGTTAATATACCTTCACCATGAAAAACATGTCATCCATAGAGACCTTAAGCCTTCAAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGCGCTATACTGGCGAGTACGGCTGATCAAGCAAATTCTTTCGTTGGCACGTATGCTTACATGTCTCCGGAGAGACTCAATGGGGACAAATATGACAACAAAAGTGACATATGGAGTTTGGGTTTGGTTTTGCTAGAATGTGCTACGGGTCAATTTCCATATGCTCCACCGGATAAGGATAAAGGATGGGAAGGTTTTTTTGATGTTATGGTAGCTGTAGTAGAACTAGCATCACCTTCTGCGCCCGAACAATTTTCTCCAGAGTTTTGCTCTTTCATTTCTTCATGCTTACAGAAAGACCCTCAGAAGAGAAGCTCTGCTCGCGAACTTCTGGTACATCCTTTCATCAAAAACAACCTTCTAATTTTTATTTGGAACAGGAGTCAGCCACAGGCTCTTCCACTTTGA 1047 41.64 MKKDSSMNPNLTLLLPPPDEVSFAFITRSGTFTDGDLLVNRDGVRIVSQTDDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTSQFFALKVIQMNAEESYCRLVAKELKINQLTQNPFIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVETILEPYLAAICYQVLKGLIYLHHEKHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTADQANSFVGTYAYMSPERLNGDKYDNKSDIWSLGLVLLECATGQFPYAPPDKDKGWEGFFDVMVAVVELASPSAPEQFSPEFCSFISSCLQKDPQKRSSARELLVHPFIKNNLLIFIWNRSQPQALPL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2094949 2097467 + CmPI595203_11g001620.1 Cmu11g0162 428684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0162 348 FunFam Mitogen-activated protein kinase kinase 1 52 149 - -
Cmu11g0162 348 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cmu11g0162 348 Gene3D Transferase(Phosphotransferase) domain 1 150 337 - -
Cmu11g0162 348 CDD PKc_MAPKK_plant_like 68 331 - -
Cmu11g0162 348 SUPERFAMILY Protein kinase-like (PK-like) 55 341 IPR011009 -
Cmu11g0162 348 ProSiteProfiles Protein kinase domain profile. 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0162 348 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 46 331 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cmu11g0162 348 FunFam mitogen-activated protein kinase kinase 3 150 334 - -
Cmu11g0162 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0162 348 SMART serkin_6 70 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0162 348 Gene3D Phosphorylase Kinase; domain 1 49 149 - -
Cmu11g0162 348 Pfam Protein kinase domain 73 329 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1398 Cmu-Chr7:29247554 Cmu11g0162 Cmu-Chr11:2094949 4.30E-53 dispersed
Cmu09g0699 Cmu-Chr9:6530835 Cmu11g0162 Cmu-Chr11:2094949 7.70E-31 dispersed
Cmu10g2151 Cmu-Chr10:27534084 Cmu11g0162 Cmu-Chr11:2094949 3.30E-57 dispersed
Cmu11g0162 Cmu-Chr11:2094949 Cmu11g0198 Cmu-Chr11:2444973 3.00E-112 dispersed
Cmu04g1081 Cmu-Chr4:25408940 Cmu11g0162 Cmu-Chr11:2094949 7.50E-65 transposed
Cmu11g0162 Cmu-Chr11:2094949 Cmu03g2132 Cmu-Chr3:29735376 2.20E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75902 PF00069 Pkinase 6.30E-70 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0162 K20603 - csv:101206374 633.254