Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0163 ATGACATCCGTGGCGGTTGCCGTTAACGGCGTCCGCGGCGGCAAAGGCGGCGGAGCAAGCCGCCGCGCTGTCAGATGGGCCGTCGAGAATCTCTTGCCGACCGCCGATCGCTTCATTTTGGTTCACGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTTGCTGTCTCTGAACTTGATGCAGATGTGGTAGCTCTTTATGTTCATGATATGAAAAAGAAATATGAACAAGTTTTTGTACCTTTTAAGAAGTTATGTAGAAGAGAAAAGTTTCTTCTTCTGGTAGAAACTTTGATTTTGGAGGATGACAATCCTGCCACTGCACTTTTGAGATATGCATCTCAATCTGGGATTAAATGCTTGGTTTTGGGTTCTTGTTTTAGAACTTGCATAGCAAGGAAGATAAAAGGGGATTCAGTACCCTCTGCTATTATGAGAACTGCTAGTTCTTTTGATATTTATGTTATATATAAGAGGAGAGTTATCACACGAACCGCTAGTACTGCTCCATCTAGTGAAACTGACTCGAGGCAGTGGATGCTTGGTGACACTGATTATTACAGGGGTTTCAGTGCTGTTAGTGAAAAATTATCAGGAACTTCCTCTCCTTCTTCCTTGTCGATTGGACATCGAAGGGGTGATAGCCTCGAAGTTAACTCTACTGAGCAACTGAACTCTTTAAGCACTCTGACTGAGGAGGAAGATATGCGGGCTGAAGTTGAATCTCTGCAGCTAGAACTAGAGACCACTGTTTCCTTGTACAATCAAGCTTGTGAAGAACTAGTACATGCTCAGAAGAAGGTTCAGTCACTTACATCAGAATGCCTTGAAGAATCAAGAAAAGTGAATGCTGCTTTGGAAAGGGAACAATCTTTGAGGAAAGTTGCTGCTAAAGAGAAAGCAAAGCATTTGGAAGCCATTAAAGAGCTTGAGGAGGCTAAAGACTTGCTGGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCATAAAGGAGTCCGTGGAGAAGCAGAAAATTCTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGATATACCACTGCCGAAATAGAAGCTGCAACAAATTTCTTCGACGAAGTTAATGTGATTGGCATCGGAGGATATGGGAAAGTCTACAAATGCAGTCTCGATCATACACCTGTAGCCATTAAGGTTTTTCAACACGACATATTCGAGAAAAAAGATGAGTTTCTGAAAGAGGTTGAAATTCTAAGTCAGATACGACATCCGCACGTGGTTTTACTGCTTGGAGCTTGTCCCGAGCGAGGTTGTTTGATCTATGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGGAAAGGAAAAGCTCCCCTCCCTTGGTCTATTAGATTTAGAATAGTTTTTCAAGTAGCTTCTGGCCTTGCATTTTTACACAATTCAAAGCCAGAGCCTATCATTCATAGAGATCTCAAACCGGGTAATATCTTACTGGACAGAAACTTTGTAAGTAAAATCTCAGATGTTGGAATGGCTAAGATCATCGGCGATATTGTGCCGGACAATGTCACGGAGTACCGAAACACCATTCTTGCCGGTACTCTACATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGGCCAAAGTCAGATACGTACGCACTTGGGGTAACAATTCTGCAGTTGTTGACCGGGCGAGAACCACACGGTCTTCTTCTGGCTATTGAAAACTCCATCGCAAGCGCGTCCCTTGCAGATATTCTAGACAAGTCAATAACTGACTGGCCTCTGGCTGAAGCTGAAGAGTTAGCTCAACTCGCACTCAAGTGCTTGAAACTTAGATGCAGGGATAGGCCAGATCTTGAATCTGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATTCTTGTCAAAATGAAGGCAAAAATCCTGCTAATCCCCCAAGCCACTACTTCTGCCCAATCCTACAGGAAATCATGGAGGACCCTTATATAGCAGCCGATGGCTTTACTTATGAGTATGTAGCCATTAAAGCATGGCTCGAGAAATACGACGTATCGCCGGTGACAAAGCTTAAGCTTCAGCATTCTATTTTTATTCCAAACCACACTCTGCTCTCTGCCATACTAGAGTGGAAGTCAAGAGTGACATTTCCATCTTCCTAA 2187 43.48 MTSVAVAVNGVRGGKGGGASRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDMKKKYEQVFVPFKKLCRREKFLLLVETLILEDDNPATALLRYASQSGIKCLVLGSCFRTCIARKIKGDSVPSAIMRTASSFDIYVIYKRRVITRTASTAPSSETDSRQWMLGDTDYYRGFSAVSEKLSGTSSPSSLSIGHRRGDSLEVNSTEQLNSLSTLTEEEDMRAEVESLQLELETTVSLYNQACEELVHAQKKVQSLTSECLEESRKVNAALEREQSLRKVAAKEKAKHLEAIKELEEAKDLLAKEAYERQLAELNAIKESVEKQKILDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGIGGYGKVYKCSLDHTPVAIKVFQHDIFEKKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRKGKAPLPWSIRFRIVFQVASGLAFLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPKSDTYALGVTILQLLTGREPHGLLLAIENSIASASLADILDKSITDWPLAEAEELAQLALKCLKLRCRDRPDLESEVLPVLKRLVDFADSCQNEGKNPANPPSHYFCPILQEIMEDPYIAADGFTYEYVAIKAWLEKYDVSPVTKLKLQHSIFIPNHTLLSAILEWKSRVTFPSS 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2098871 2102340 - CmPI595203_11g001630.1 Cmu11g0163 428685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0163 728 Coils Coil 258 278 - -
Cmu11g0163 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 724 IPR013083 -
Cmu11g0163 728 ProSiteProfiles Protein kinase domain profile. 371 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0163 728 FunFam Os07g0541700 protein 444 534 - -
Cmu11g0163 728 ProSiteProfiles U-box domain profile. 653 726 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g0163 728 Gene3D Phosphorylase Kinase; domain 1 350 443 - -
Cmu11g0163 728 Gene3D HUPs 2 160 IPR014729 -
Cmu11g0163 728 Pfam Universal stress protein family 18 152 IPR006016 -
Cmu11g0163 728 CDD STK_N 3 162 - -
Cmu11g0163 728 MobiDBLite consensus disorder prediction 200 224 - -
Cmu11g0163 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 489 501 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0163 728 CDD RING-Ubox_WDSUB1-like 655 709 - -
Cmu11g0163 728 SMART Ubox_2 657 719 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g0163 728 SUPERFAMILY Protein kinase-like (PK-like) 354 627 IPR011009 -
Cmu11g0163 728 ProSitePatterns Protein kinases ATP-binding region signature. 377 398 IPR017441 GO:0005524(InterPro)
Cmu11g0163 728 SMART serkin_6 371 634 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0163 728 Pfam U-box domain 655 720 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu11g0163 728 Coils Coil 297 343 - -
Cmu11g0163 728 Gene3D Transferase(Phosphotransferase) domain 1 444 651 - -
Cmu11g0163 728 PANTHER OS02G0152300 PROTEIN 4 716 IPR051348 -
Cmu11g0163 728 Pfam Protein kinase domain 373 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0163 728 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 142 - -
Cmu11g0163 728 SUPERFAMILY RING/U-box 645 722 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0448 Cmu-Chr1:4645907 Cmu11g0163 Cmu-Chr11:2098871 1.90E-126 dispersed
Cmu05g0168 Cmu-Chr5:1461590 Cmu11g0163 Cmu-Chr11:2098871 2.70E-91 dispersed
Cmu06g0363 Cmu-Chr6:4177363 Cmu11g0163 Cmu-Chr11:2098871 2.10E-68 dispersed
Cmu11g0163 Cmu-Chr11:2098871 Cmu11g1150 Cmu-Chr11:21749267 8.90E-103 dispersed
Cmu11g0163 Cmu-Chr11:2098871 Cmu09g0078 Cmu-Chr9:944752 5.60E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75903 PF00069 Pkinase 1.70E-41 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0163 - - - 0.0