Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0187 ATGATCGTCGGCGAGCAGCCCAAACGCCCCAATCCGACGGTTCAGGTTCCACCGTGGACGTTTATGGAGGATTCGGTGATGGATGTGTACAGTCATTCGCCGGGGAGCGGTGGCAGCAGTGGTTCCGTTAAGTGTGACGGATGTTCCAGCGGAGGCGGATACTCTCCTTATTATCTGCAGGAAGCGTTGGCGATGCTGAAGCGGTATCTTCCGTCTAATGAGGCGGAGATGGACTCGGATTTTGATGTTTCAAGTCGGGAGTTGGATTCTCCGGTGGATGCATACTCTTCCGATCAGTTTCGAATGTATGAGTTCAAGATTAAGAAGTGTACGAGAGGACGATCGCACGACTGGACTGAGTGTCCGTTTGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCGAGGAGGTATTACTATTCAGGTACGGCATGTGCGGATTTTCGGAAAGGGAGCTGTATGAAAGGAGATGCGTGTGAGTTTGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGCTATCGGACTCAGCCATGCAAGGATGGGACGAGTTGTCGGAGAAGAGTTTGTTTCTTCGCTCATACGCCGGAGCAACTTAGGGTTTTGCCTCAACAAAGCCCTCGGAGTACGAGTTCCATCCCTTCGTACGATGGATCGCCTCTCCGGCAAGCAATCGAGGCCTGTGCAAAGCAAATGCCCTATTTATCTTCTCCAGGAACATCGCCGCCAGTATCTCCTCGAATCGAGTCTCCACCTCAATCGCCGATGATTAAGTCACTAAATCGACCTCACGCAACAAGTTCGATCAACGAAATGGTTGCATCACTGCGAAGTTTACAGCTCAATAAGGAACTCTGCAAGGTACAATCTCCTTCTTCCTCGTGGAATGTTCAAGTCGGATCTCCTGTATTCGGATCTCCTGTATTCGGATCTCCAAAGGAATCCACCGCTAGATCCGGTTTATGTAGCCTTCCAGAAACTCCGACTCGTCCAGTTACCCGTTATCTCGATTTCTGGGACCTAGGCTGCGGAGAGGAACCGGCGATGGAGCGAGTGGAGTCCGGAAGAGATCTTCGTGCAAAAATGTTTGAAAAATTGAGGAAGGAGAACTCCGTCGGGTGCGGCGATCAAGACAAATACAGCGGCGGCGGAGGTCTGGATGTCGGTTGGATCTCGGAGCTTCTCAAGTAA 1194 51.93 MIVGEQPKRPNPTVQVPPWTFMEDSVMDVYSHSPGSGGSSGSVKCDGCSSGGGYSPYYLQEALAMLKRYLPSNEAEMDSDFDVSSRELDSPVDAYSSDQFRMYEFKIKKCTRGRSHDWTECPFAHPGEKARRRDPRRYYYSGTACADFRKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSPGTSPPVSPRIESPPQSPMIKSLNRPHATSSINEMVASLRSLQLNKELCKVQSPSSSWNVQVGSPVFGSPVFGSPKESTARSGLCSLPETPTRPVTRYLDFWDLGCGEEPAMERVESGRDLRAKMFEKLRKENSVGCGDQDKYSGGGGLDVGWISELLK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2306146 2307339 - CmPI595203_11g001870.1 Cmu11g0187 428709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0187 397 Gene3D - 103 165 - -
Cmu11g0187 397 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872(InterPro)
Cmu11g0187 397 FunFam Zinc finger CCCH domain-containing protein 66 97 165 - -
Cmu11g0187 397 PANTHER UNKEMPT FAMILY MEMBER 55 397 IPR045234 -
Cmu11g0187 397 SMART c3hfinal6 139 165 IPR000571 GO:0046872(InterPro)
Cmu11g0187 397 SMART c3hfinal6 174 197 IPR000571 GO:0046872(InterPro)
Cmu11g0187 397 SUPERFAMILY CCCH zinc finger 138 168 IPR036855 GO:0046872(InterPro)
Cmu11g0187 397 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1809 Cmu-Chr5:28221820 Cmu11g0187 Cmu-Chr11:2306146 6.20E-86 dispersed
Cmu07g0298 Cmu-Chr7:2964354 Cmu11g0187 Cmu-Chr11:2306146 3.90E-57 dispersed
Cmu07g1670 Cmu-Chr7:32037698 Cmu11g0187 Cmu-Chr11:2306146 5.10E-46 dispersed
Cmu08g1620 Cmu-Chr8:27903551 Cmu11g0187 Cmu-Chr11:2306146 8.50E-63 dispersed
Cmu10g2450 Cmu-Chr10:31089153 Cmu11g0187 Cmu-Chr11:2306146 1.10E-50 dispersed
Cmu11g0187 Cmu-Chr11:2306146 Cmu03g2183 Cmu-Chr3:30337099 3.10E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7103 None None None None Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0187 - - - 0.0