Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0197 ATGTCGTGGCAAACGTACGTCGATGATCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCTCCTCATTTCCTCAGTTCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGTCATCTTGCACCTACTGGATTACACCTTGGAGGTACAAAGTATATGGTAATCCAAGGAGAGCCTGGAGCTGTCATCCGTGGAAAGAAGGGATCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTCTTTGGAATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGTGATTACCTTGTCGATCAGGGTCTGTAG 402 49.25 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSSSFPQFKPEEITGIMKDFDEPGHLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2441575 2443069 + CmPI595203_11g001970.1 Cmu11g0197 428719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0197 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cmu11g0197 133 PANTHER PROFILIN 1 132 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cmu11g0197 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 FunFam Profilin 1 133 - -
Cmu11g0197 133 SMART prof_2 1 133 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cmu11g0197 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cmu11g0197 133 Pfam Profilin 1 132 IPR048278 GO:0003779(InterPro)
Cmu11g0197 133 CDD PROF 2 132 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779(InterPro)
Cmu11g0197 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0024 Cmu-Chr9:537058 Cmu11g0197 Cmu-Chr11:2441575 3.10E-61 dispersed
Cmu11g0197 Cmu-Chr11:2441575 Cmu11g1503 Cmu-Chr11:27345412 7.40E-56 dispersed
Cmu11g0197 Cmu-Chr11:2441575 Cmu11g0198 Cmu-Chr11:2444973 2.60E-48 tandem
Cmu11g0197 Cmu-Chr11:2441575 Cmu07g1316 Cmu-Chr7:28482162 1.70E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0197 K05759 - csv:101219322 260.381