Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0198 | ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGAAAATTTTCTAGTACTACAATTTTTCATACTTCCATTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTACTCGCTAGTGTATGGGCTTGTGGGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATTAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGATCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCCAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTCTAGTTTTCTTCCATAGGAATCTCGATTCCTTATCACTTCCATTTTTCCAATTCGATTCCAATTGCTTACACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA | 2301 | 41.2 | MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAENFLVLQFFILPLLLATKLVHYFLLASVWACGMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIQKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFLVFFHRNLDSLSLPFFQFDSNCLHMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNNRLFDSHS | 766 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2444973 | 2457607 | + | CmPI595203_11g001980.1 | Cmu11g0198 | 428720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0198 | 766 | Pfam | Profilin | 1 | 116 | IPR048278 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | Gene3D | Transferase(Phosphotransferase) domain 1 | 338 | 531 | - | - | |
Cmu11g0198 | 766 | SMART | prof_2 | 1 | 131 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | ProSitePatterns | Profilin signature. | 1 | 8 | IPR027310 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | ProSitePatterns | Protein kinases ATP-binding region signature. | 263 | 286 | IPR017441 | GO:0005524(InterPro) | |
Cmu11g0198 | 766 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 211 | 533 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Cmu11g0198 | 766 | ProSiteProfiles | Protein kinase domain profile. | 257 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0198 | 766 | Gene3D | Phosphorylase Kinase; domain 1 | 226 | 336 | - | - | |
Cmu11g0198 | 766 | Pfam | Protein kinase domain | 258 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 27 | 40 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 71 | 80 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 1 | 14 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 104 | 117 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 84 | 99 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Plant profilin signature | 52 | 66 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Profilin signature | 100 | 113 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Profilin signature | 3 | 12 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Profilin signature | 40 | 60 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Profilin signature | 21 | 30 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | PRINTS | Profilin signature | 64 | 78 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | SUPERFAMILY | Profilin (actin-binding protein) | 2 | 125 | IPR036140 | - | |
Cmu11g0198 | 766 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 375 | 387 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g0198 | 766 | FunFam | Mitogen-activated protein kinase kinase 6 | 338 | 536 | - | - | |
Cmu11g0198 | 766 | Gene3D | Dynein light chain 2a, cytoplasmic | 2 | 127 | - | - | |
Cmu11g0198 | 766 | FunFam | Profilin | 1 | 130 | - | - | |
Cmu11g0198 | 766 | FunFam | Mitogen-activated protein kinase kinase 6 | 227 | 336 | - | - | |
Cmu11g0198 | 766 | MobiDBLite | consensus disorder prediction | 746 | 766 | - | - | |
Cmu11g0198 | 766 | SMART | serkin_6 | 257 | 517 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0198 | 766 | CDD | PKc_MAPKK_plant_like | 255 | 521 | - | - | |
Cmu11g0198 | 766 | CDD | PROF | 2 | 112 | IPR005455 | GO:0003779(InterPro) | |
Cmu11g0198 | 766 | SUPERFAMILY | Protein kinase-like (PK-like) | 255 | 518 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu03g2132 | Cmu-Chr3:29735376 | Cmu11g0198 | Cmu-Chr11:2444973 | 1.70E-124 | dispersed | |
Cmu08g1198 | Cmu-Chr8:24400029 | Cmu11g0198 | Cmu-Chr11:2444973 | 1.60E-06 | dispersed | |
Cmu11g0162 | Cmu-Chr11:2094949 | Cmu11g0198 | Cmu-Chr11:2444973 | 3.00E-112 | dispersed | |
Cmu11g0198 | Cmu-Chr11:2444973 | Cmu11g1503 | Cmu-Chr11:27345412 | 5.60E-47 | dispersed | |
Cmu11g0197 | Cmu-Chr11:2441575 | Cmu11g0198 | Cmu-Chr11:2444973 | 2.60E-48 | tandem | |
Cmu05g1616 | Cmu-Chr5:25941451 | Cmu11g0198 | Cmu-Chr11:2444973 | 4.40E-07 | transposed | |
Cmu07g1398 | Cmu-Chr7:29247554 | Cmu11g0198 | Cmu-Chr11:2444973 | 3.50E-55 | transposed | |
Cmu08g0926 | Cmu-Chr8:21556014 | Cmu11g0198 | Cmu-Chr11:2444973 | 3.50E-08 | transposed | |
Cmu10g2151 | Cmu-Chr10:27534084 | Cmu11g0198 | Cmu-Chr11:2444973 | 3.30E-65 | transposed | |
Cmu11g0198 | Cmu-Chr11:2444973 | Cmu03g2197 | Cmu-Chr3:30469660 | 1.60E-22 | wgd | |
Cmu11g0198 | Cmu-Chr11:2444973 | Cmu07g1315 | Cmu-Chr7:28472089 | 4.00E-21 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75905 | PF00069 | Pkinase | 1.10E-65 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0198 | K04368 | - | csv:101218848 | 674.855 |