Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0198 ATGTCGTGGCAAGTTTACGTCGATGATCATTTGATGTGCGAAATTGAGGGCAATCACCTCACATCTGCGGCCATTATCGGCCAAGACGGCAGTGTTTGGGCTAAAAGCGAAAATTTCCCTCAGCTCAAGCCTGAAGAAATTACTGGCATCTTGAATGACTTCAATGAACCCGGGACGCTTGCTCCGACTGGTTTGTACATTGGTGGTTCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTTATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTGCTCTGGCTTTAGTCATTGGCATCTATGATGAACCAATGACTCCTGAACTTGGTTTGGTTGCTTTTAGGTCTTTGGCAGAAAATTTTCTAGTACTACAATTTTTCATACTTCCATTATTGCTTGCTACTAAGCTGGTGCATTACTTTCTACTCGCTAGTGTATGGGCTTGTGGGATGATACCTATGGACACGATATCTTGGCTTGGGGAAGAGACAACAATCATCTTTGAGTGCTTTGGTTTGGAATTTGATAAACAAACCATTCGGAGGAAGATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCTGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTACTACTGAACCAGAAAGGATTACGGCTTGTATCTGAAGAGAAAGAAGCGCAGACTTCAGATTGTAAGGAGCTTGATGTTGATTTCTCATTGGAAGATCTTGAGACTGTGAAAGTTATTGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAGTGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATTAATCAAGCAGCACAATGTCCACATATTGTGGTCTGCTATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGCGGTTCTCTAGCCGATGTAGTCAGACAAATCAAAACAATTCTTGAACCATATCTTGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGGCATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTTAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCGATGCTAGCAAGTTCTATGGGTCAAAGAGATACATTTGTAGGGACGTACAATTACATGTCGCCTGAACGAATTAGTGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGCTTGGTAGTACTTGAATGTGCCATCGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTAGAGGCAATTGTAGCAAAGCCACCGCCTTCTGCCCCACCGGATCAATTTTCCCCCGAGTTCTGTTCCTTCGTTTCTGCTTGCATTAAGAAGGATCCTAAAGAAAGATCGTCATCATTAGATCTTCTGAATCATCCTTTCATCCAGAAATTCGAAGATAAAGACATTGATGTCGGGATTCTCGTAGGCAGCTTGGATCCTCCGGTGTTCTCCTTAGCCACAAAATCCAACCTGGCTTCAAAAGTCGTTTTTGCCACTTTTCTAGTTTTCTTCCATAGGAATCTCGATTCCTTATCACTTCCATTTTTCCAATTCGATTCCAATTGCTTACACATGGAAGACAAAGAGAAGATTGAAGCTTTTGAAGCTATGGAGTTTAGGGAACTCAGTTGGGTGATTATGAAAACTAGAGAAAATGAAGTTTTCGAAGCTTCTACTTCTACTATTGATTCTTCTTTAGAGAATTCTATAAACTCAATTGAATCCTCTTCGTCAGAATTGTTAGAAGATGCATCGTCGTCTTCTTTAACGTCTAACGTTTCGTCATTGTCATTGTCGCCATCAGTATCATCATCGGAGGGACCTCTCTATGAACTCTCAGAGCTCATGGCCCATCTCCCCATCAAGAGAGGGTTATCAAAGTTCTACAATGGAAAATCACAATCTTTTACATCTCTAGCAAGTGCAAAGAGCTTAGAAGATCTTGCAAAGAGAGTGAATAATATTTCTCAAAGGAAAAGGATGAAGTCTTGCAAAAGCTATGGAGGAGGTTTTGATGCTCAAAAATCTTCTTATTCTCCAAAGCCTTTGATTGCTAAAAGAGTTTCAAAGGGTTCTTCTTTGCTATCTCCTGTTTCTAAGAGAAATAATAGGCTATTTGATAGCCATTCTTGA 2301 41.2 MSWQVYVDDHLMCEIEGNHLTSAAIIGQDGSVWAKSENFPQLKPEEITGILNDFNEPGTLAPTGLYIGGSKYMVIQGEPGAVIRGKKGPGGVTVKKTALALVIGIYDEPMTPELGLVAFRSLAENFLVLQFFILPLLLATKLVHYFLLASVWACGMIPMDTISWLGEETTIIFECFGLEFDKQTIRRKMKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKEAQTSDCKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQIKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIQKFEDKDIDVGILVGSLDPPVFSLATKSNLASKVVFATFLVFFHRNLDSLSLPFFQFDSNCLHMEDKEKIEAFEAMEFRELSWVIMKTRENEVFEASTSTIDSSLENSINSIESSSSELLEDASSSSLTSNVSSLSLSPSVSSSEGPLYELSELMAHLPIKRGLSKFYNGKSQSFTSLASAKSLEDLAKRVNNISQRKRMKSCKSYGGGFDAQKSSYSPKPLIAKRVSKGSSLLSPVSKRNNRLFDSHS 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2444973 2457607 + CmPI595203_11g001980.1 Cmu11g0198 428720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0198 766 Pfam Profilin 1 116 IPR048278 GO:0003779(InterPro)
Cmu11g0198 766 Gene3D Transferase(Phosphotransferase) domain 1 338 531 - -
Cmu11g0198 766 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Cmu11g0198 766 ProSitePatterns Protein kinases ATP-binding region signature. 263 286 IPR017441 GO:0005524(InterPro)
Cmu11g0198 766 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 211 533 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Cmu11g0198 766 ProSiteProfiles Protein kinase domain profile. 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0198 766 Gene3D Phosphorylase Kinase; domain 1 226 336 - -
Cmu11g0198 766 Pfam Protein kinase domain 258 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 SUPERFAMILY Profilin (actin-binding protein) 2 125 IPR036140 -
Cmu11g0198 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 375 387 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0198 766 FunFam Mitogen-activated protein kinase kinase 6 338 536 - -
Cmu11g0198 766 Gene3D Dynein light chain 2a, cytoplasmic 2 127 - -
Cmu11g0198 766 FunFam Profilin 1 130 - -
Cmu11g0198 766 FunFam Mitogen-activated protein kinase kinase 6 227 336 - -
Cmu11g0198 766 MobiDBLite consensus disorder prediction 746 766 - -
Cmu11g0198 766 SMART serkin_6 257 517 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0198 766 CDD PKc_MAPKK_plant_like 255 521 - -
Cmu11g0198 766 CDD PROF 2 112 IPR005455 GO:0003779(InterPro)
Cmu11g0198 766 SUPERFAMILY Protein kinase-like (PK-like) 255 518 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2132 Cmu-Chr3:29735376 Cmu11g0198 Cmu-Chr11:2444973 1.70E-124 dispersed
Cmu08g1198 Cmu-Chr8:24400029 Cmu11g0198 Cmu-Chr11:2444973 1.60E-06 dispersed
Cmu11g0162 Cmu-Chr11:2094949 Cmu11g0198 Cmu-Chr11:2444973 3.00E-112 dispersed
Cmu11g0198 Cmu-Chr11:2444973 Cmu11g1503 Cmu-Chr11:27345412 5.60E-47 dispersed
Cmu11g0197 Cmu-Chr11:2441575 Cmu11g0198 Cmu-Chr11:2444973 2.60E-48 tandem
Cmu05g1616 Cmu-Chr5:25941451 Cmu11g0198 Cmu-Chr11:2444973 4.40E-07 transposed
Cmu07g1398 Cmu-Chr7:29247554 Cmu11g0198 Cmu-Chr11:2444973 3.50E-55 transposed
Cmu08g0926 Cmu-Chr8:21556014 Cmu11g0198 Cmu-Chr11:2444973 3.50E-08 transposed
Cmu10g2151 Cmu-Chr10:27534084 Cmu11g0198 Cmu-Chr11:2444973 3.30E-65 transposed
Cmu11g0198 Cmu-Chr11:2444973 Cmu03g2197 Cmu-Chr3:30469660 1.60E-22 wgd
Cmu11g0198 Cmu-Chr11:2444973 Cmu07g1315 Cmu-Chr7:28472089 4.00E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75905 PF00069 Pkinase 1.10E-65 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0198 K04368 - csv:101218848 674.855