Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0216 | ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCTCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA | 759 | 55.6 | MADATVPETDSGGSSNSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2628146 | 2628904 | - | CmPI595203_11g002160.1 | Cmu11g0216 | 428738 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0216 | 252 | MobiDBLite | consensus disorder prediction | 141 | 175 | - | - | |
Cmu11g0216 | 252 | SUPERFAMILY | DNA-binding domain | 55 | 113 | IPR016177 | GO:0003677(InterPro) | |
Cmu11g0216 | 252 | PRINTS | Ethylene responsive element binding protein signature | 56 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | PRINTS | Ethylene responsive element binding protein signature | 78 | 94 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | FunFam | Ethylene-responsive transcription factor 2 | 54 | 113 | - | - | |
Cmu11g0216 | 252 | CDD | AP2 | 54 | 114 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | Coils | Coil | 217 | 237 | - | - | |
Cmu11g0216 | 252 | ProSiteProfiles | AP2/ERF domain profile. | 55 | 112 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 38 | 200 | IPR051032 | - | |
Cmu11g0216 | 252 | MobiDBLite | consensus disorder prediction | 143 | 160 | - | - | |
Cmu11g0216 | 252 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
Cmu11g0216 | 252 | SMART | rav1_2 | 55 | 118 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | MobiDBLite | consensus disorder prediction | 8 | 44 | - | - | |
Cmu11g0216 | 252 | Pfam | AP2 domain | 54 | 104 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0216 | 252 | Gene3D | AP2/ERF domain | 55 | 113 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g0109 | Cmu-Chr8:2170118 | Cmu11g0216 | Cmu-Chr11:2628146 | 8.60E-27 | dispersed | |
Cmu08g1161 | Cmu-Chr8:24030935 | Cmu11g0216 | Cmu-Chr11:2628146 | 1.90E-40 | dispersed | |
Cmu11g0216 | Cmu-Chr11:2628146 | Cmu11g1516 | Cmu-Chr11:27478290 | 4.90E-40 | dispersed | |
Cmu10g1090 | Cmu-Chr10:3178844 | Cmu11g0216 | Cmu-Chr11:2628146 | 1.20E-37 | transposed | |
Cmu11g0216 | Cmu-Chr11:2628146 | Cmu06g0937 | Cmu-Chr6:13144561 | 1.20E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7105 | PF00847 | AP2 | 7.40E-13 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0216 | K09286 | - | csv:101212945 | 340.502 |