Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0216 ATGGCCGACGCCACCGTGCCGGAGACCGACTCCGGTGGCAGCTCCAATTCCTGGTCCTCGTCTTCTTCCTCGACGTCATGTTCGATCTCGTCTCCGTCGAAACAAGTCGGTAGCCGAACGTCGTCGAAGCGCAGTCGAGAGAGTAGCAACAATCGTCACCCAAGTTACCGAGGCGTCCGAATGAGGGCGTGGGGCAAATGGGTGTCGGAAATTCGAGAGCCGAAGAAGAAGAGTCGGATCTGGCTCGGCACCTTCGCCACACCCGACATGGCGGCACGTGCTCACGACGTAGCCGCCCTTACTATCAAAGGCAATTCAGCCATCCTCAATTTCCCTGAACTCGCCGCCTCATTACCCCGCCCCGCCTCCTCGTCCCCTCGGGACGTTCAATCCGCCGCCGCCCTCGCCGCTTCAATGCAACTTCCTGACGTCGTCTCACCTCCTCCACCACCGCCACCCCCACCCTCATCGCCTCCCTTCTCGTCATCGTCCGAGTTGGACGAGTCGACACCGGAGGAATTGAGTGAAATTGTGGTGCTGCCCAGTTTGGGAACGGGGTACGAGGAATCGGCCGAGTCAGTGACCGAGTTTGTGTTTGACGAGTGGCAATATAGCTATGAGCCGTGGGATCAACAAAATCAAAGCTCAAAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTATAGATCAAATGGCAATGGCGGAAAAAGAGTGTGTGATTCCCACTGCATTATTTCAACCTTTACCTTTCTCGTGGTAA 759 55.6 MADATVPETDSGGSSNSWSSSSSSTSCSISSPSKQVGSRTSSKRSRESSNNRHPSYRGVRMRAWGKWVSEIREPKKKSRIWLGTFATPDMAARAHDVAALTIKGNSAILNFPELAASLPRPASSSPRDVQSAAALAASMQLPDVVSPPPPPPPPPSSPPFSSSSELDESTPEELSEIVVLPSLGTGYEESAESVTEFVFDEWQYSYEPWDQQNQSSKEEEEEAYEYFIDQMAMAEKECVIPTALFQPLPFSW 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2628146 2628904 - CmPI595203_11g002160.1 Cmu11g0216 428738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0216 252 MobiDBLite consensus disorder prediction 141 175 - -
Cmu11g0216 252 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677(InterPro)
Cmu11g0216 252 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 FunFam Ethylene-responsive transcription factor 2 54 113 - -
Cmu11g0216 252 CDD AP2 54 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 Coils Coil 217 237 - -
Cmu11g0216 252 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 200 IPR051032 -
Cmu11g0216 252 MobiDBLite consensus disorder prediction 143 160 - -
Cmu11g0216 252 MobiDBLite consensus disorder prediction 1 59 - -
Cmu11g0216 252 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 MobiDBLite consensus disorder prediction 8 44 - -
Cmu11g0216 252 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0216 252 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0109 Cmu-Chr8:2170118 Cmu11g0216 Cmu-Chr11:2628146 8.60E-27 dispersed
Cmu08g1161 Cmu-Chr8:24030935 Cmu11g0216 Cmu-Chr11:2628146 1.90E-40 dispersed
Cmu11g0216 Cmu-Chr11:2628146 Cmu11g1516 Cmu-Chr11:27478290 4.90E-40 dispersed
Cmu10g1090 Cmu-Chr10:3178844 Cmu11g0216 Cmu-Chr11:2628146 1.20E-37 transposed
Cmu11g0216 Cmu-Chr11:2628146 Cmu06g0937 Cmu-Chr6:13144561 1.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7105 PF00847 AP2 7.40E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0216 K09286 - csv:101212945 340.502