Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0226 ATGGAACCTTCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACGAGATCCTCGAGCGGATCGGATCCGGCGCTTATTCCGATGTCCACCGTGCGCGGCGGCTCTCCGATGGCGTTATCGTCGCTTTGAAGGAGATCCACGATTATCAGTCGGCGTTCCGCGAAATCGAGGCGCTTCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCATGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCTGGGCGGGGGCTTCCGGCCGGGGAGTTGAAGCGGTGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCACAGAAATATGATCGTGCATAGGGATATGAAACCTAGCAATTTGTTGATCTCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGGATACTCATGGAGCCTGAATATGTTGAATCGAATGAGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAGGTGCCTGCTTCTCAGCCATCTACAATTTTTCCAGGAACAGAAAGCTCGGTTCGAGAAGGTAACAGAACTGAGGAACAAGAACCAATTAGCAAAGAAGAATATTTTAGAGTTTTAGACGAGTTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACAAGTGACCTTGAAGATGATCCATTCAAAGGTTCATCATATTCTTACGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAAGGTTCTCTCACCTCATGTGTTGGTACTCGCTGGTTCAGGGCCCCTGAATTACTCTATGGCTCTACGAGCTACGGTTTGGAGATCGACTTATGGGCATTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCCCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATCTTCACTACTCTAGGCAACTTGACTGAAGATTCGTGGCCAGGTTGTTCCGAACTTCCTGATTTTCAAATTATATCATTCAACACAATAGAAAAGCCGATCGGTCTAGAAGCATGTCTTCCCAACTGTTCTCCTGATGAAATTTCTATTGTTAAAAGACTTCTTTGTTACAACCCGGCTAATCGAGCGACTGCTATGGAATTGTTACAAGATAAGTATTTCACTGAGGAGCCACTTCCCGTTCCCTTGTCTGAGCTACATGTTCCTACGACAAAAACTGGACAGGATGAGGATTCTCCTGCAGGATGGTACGACTACAATGAGTTGGATTCTGATATGGATGAATTCGGCCCCATGAATGTTACCACCACTGCCACTGGTTACTCCATTCAATTTGATTGA 1449 46.03 MEPSSAKSWSIHTRPDIIQKYEILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLPAGELKRWMIQILSGLDACHRNMIVHRDMKPSNLLISDDGVLKLADFGQARILMEPEYVESNEISQPCEMNSSDQVPASQPSTIFPGTESSVREGNRTEEQEPISKEEYFRVLDELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWALGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFQIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYNPANRATAMELLQDKYFTEEPLPVPLSELHVPTTKTGQDEDSPAGWYDYNELDSDMDEFGPMNVTTTATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2740120 2742080 + CmPI595203_11g002260.1 Cmu11g0226 428748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0226 482 FunFam Cyclin-dependent kinase F-1 12 106 - -
Cmu11g0226 482 SUPERFAMILY Protein kinase-like (PK-like) 7 442 IPR011009 -
Cmu11g0226 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0226 482 MobiDBLite consensus disorder prediction 188 223 - -
Cmu11g0226 482 SMART serkin_6 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0226 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0226 482 Pfam Protein kinase domain 292 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0226 482 Pfam Protein kinase domain 21 179 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0226 482 PANTHER CELL DIVISION PROTEIN KINASE 20 423 IPR050108 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0019912(PANTHER)
Cmu11g0226 482 Gene3D Transferase(Phosphotransferase) domain 1 114 203 - -
Cmu11g0226 482 Gene3D Transferase(Phosphotransferase) domain 1 270 434 - -
Cmu11g0226 482 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Cmu11g0226 482 MobiDBLite consensus disorder prediction 188 212 - -
Cmu11g0226 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0226 Cmu-Chr11:2740120 Cmu11g1394 Cmu-Chr11:26135550 9.00E-35 dispersed
Cmu11g0226 Cmu-Chr11:2740120 Cmu04g1243 Cmu-Chr4:26924112 3.90E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75907 PF00069 Pkinase 3.10E-32 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0226 - - - 0.0