Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0227 ATGGGGGAAGAAGATTCCGTGGGTGCGTCTCAGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACCGGCTATGGAGGTGCCTCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCACAGGCTCCATTAGTTGCGCAGAATCTTCCGCAAGCTCAGCCAAAGCCACAGACGCAGACGCAGATGGTGGCGGCGGCGATCGCACCTTTGGCTCCTCATTCGTCAGTAAGAGCTGTGAAACCGGAATCACCAATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAGCAGTGTAACTGTAAACACTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATATTGTGATGGTTGCAACTGCATCAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCCAAAATTGCCAGCAGCCCTCATGGAATGCGGGACAGCAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGGTGCCACTGCAAGAAATCGGGTTGTCTAAAAAAGTATTGTGAGTGTTTCCAGGCCAACATTCTCTGTTCAGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGTGAAGAGAGGCAAGCTCTTTTCCATGGAGACCATGGTAACAACATGACATTCATTCAACAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGTCAAGAACTCTACTTTGGACCAACAGCCAAGGACATATCCACCCATAGACCAGTGGCATTTCAACAGGCAAATCATATCAGAGCCACTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGTGTAGGTAGCCCGTCGTTGTTGGGTCCTTCAAAGTTCACGTATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACAATTCAAGACCAAACAACTGCTACAGAAAAGCAATCTGATGGCCAGACTGAAACTTCTGTTGCATCATCCTCTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCTAGTGCAAACCAGGCTGATAAAACCACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCACCCATGTCACCCGGAACTTTAGCTTTGATGTGTGATGAGCAAGATACAATGCTAATGGCTGCTGCTTCTCCCAATAGACTAATGGGTCCTGGCTGCAGCACCTCTTCACAACTGCCTCATGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGTTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAGATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGTGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCACTACAAATTCTAGAACTGAAACTCAAAGTAATTTGGGCCAACTCAACAATAAAGTTATGAAATCTTCAATTACACCGTCAGTGAAGACATCGCAGACAGTGACAACCCCAGCAGTTATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1779 45.87 MGEEDSVGASQKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSNSHSQSQAPLVAQNLPQAQPKPQTQTQMVAAAIAPLAPHSSVRAVKPESPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDSREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMTFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGPTAKDISTHRPVAFQQANHIRATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTIQDQTTATEKQSDGQTETSVASSSQDRLQKKDASDEKAAADDRSSANQADKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMAAASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKFRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGTTNSRTETQSNLGQLNNKVMKSSITPSVKTSQTVTTPAVMTLSNDQRQKVLPLS 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2745170 2749161 + CmPI595203_11g002270.1 Cmu11g0227 428749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0227 592 SMART CXC_2 119 159 IPR033467 -
Cmu11g0227 592 SMART CXC_2 204 245 IPR033467 -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 94 118 - -
Cmu11g0227 592 PANTHER TESMIN/TSO1-RELATED 31 520 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cmu11g0227 592 MobiDBLite consensus disorder prediction 1 79 - -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 403 419 - -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 376 450 - -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 420 434 - -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 44 79 - -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 376 402 - -
Cmu11g0227 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 207 241 IPR005172 -
Cmu11g0227 592 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 121 156 IPR005172 -
Cmu11g0227 592 ProSiteProfiles CRC domain profile. 120 244 IPR005172 -
Cmu11g0227 592 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0618 Cmu-Chr6:6962413 Cmu11g0227 Cmu-Chr11:2745170 7.00E-32 transposed
Cmu08g1252 Cmu-Chr8:24898923 Cmu11g0227 Cmu-Chr11:2745170 1.10E-26 transposed
Cmu11g0227 Cmu-Chr11:2745170 Cmu06g0905 Cmu-Chr6:12383487 3.10E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7106 PF03638 TCR 3.10E-12 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0227 - - - 0.0