Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0233 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCACCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGCCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACCCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCGTCCTCCTCCTCTTCTAATATTTCAACTGGACTTGTTGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGGTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCCGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACAAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAGGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTTGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGACCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTTGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACTCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGTCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA 2022 51.48 MSTPTPAPTSPPATNTTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRPPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSRTPSTPSRSPPPPSTSSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNGPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2800321 2803593 - CmPI595203_11g002330.1 Cmu11g0233 428755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0233 673 MobiDBLite consensus disorder prediction 586 605 - -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 1 142 - -
Cmu11g0233 673 PRINTS Proline rich extensin signature 49 74 - -
Cmu11g0233 673 PRINTS Proline rich extensin signature 4 20 - -
Cmu11g0233 673 PRINTS Proline rich extensin signature 24 41 - -
Cmu11g0233 673 FunFam proline-rich receptor-like protein kinase PERK1 281 378 - -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 582 607 - -
Cmu11g0233 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 128 620 IPR047117 -
Cmu11g0233 673 SMART serkin_6 303 539 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0233 673 FunFam Proline-rich receptor-like protein kinase PERK1 379 587 - -
Cmu11g0233 673 Pfam Protein tyrosine and serine/threonine kinase 308 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0233 673 ProSiteProfiles Protein kinase domain profile. 303 582 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0233 673 MobiDBLite consensus disorder prediction 627 655 - -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 187 277 - -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 222 252 - -
Cmu11g0233 673 Gene3D Transferase(Phosphotransferase) domain 1 379 589 - -
Cmu11g0233 673 Gene3D Phosphorylase Kinase; domain 1 282 378 - -
Cmu11g0233 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0233 673 SUPERFAMILY Protein kinase-like (PK-like) 278 576 IPR011009 -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 626 673 - -
Cmu11g0233 673 MobiDBLite consensus disorder prediction 1 155 - -
Cmu11g0233 673 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2586 Cmu-Chr5:34571610 Cmu11g0233 Cmu-Chr11:2800321 3.60E-132 dispersed
Cmu07g0911 Cmu-Chr7:23067305 Cmu11g0233 Cmu-Chr11:2800321 1.00E-155 dispersed
Cmu07g1225 Cmu-Chr7:27553333 Cmu11g0233 Cmu-Chr11:2800321 1.70E-78 dispersed
Cmu07g1341 Cmu-Chr7:28705310 Cmu11g0233 Cmu-Chr11:2800321 1.60E-86 dispersed
Cmu11g0233 Cmu-Chr11:2800321 Cmu11g0452 Cmu-Chr11:4976478 1.80E-161 dispersed
Cmu11g1729 Cmu-Chr11:29438639 Cmu11g0233 Cmu-Chr11:2800321 8.70E-72 dispersed
Cmu09g0632 Cmu-Chr9:5846196 Cmu11g0233 Cmu-Chr11:2800321 3.40E-67 transposed
Cmu11g0233 Cmu-Chr11:2800321 Cmu05g0251 Cmu-Chr5:2137975 3.10E-39 wgd
Cmu11g0233 Cmu-Chr11:2800321 Cmu06g0888 Cmu-Chr6:12121910 3.10E-198 wgd
Cmu11g0233 Cmu-Chr11:2800321 Cmu09g0219 Cmu-Chr9:2273735 1.40E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75908 PF07714 PK_Tyr_Ser-Thr 7.90E-47 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0233 - - - 0.0