Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0233 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGCGACCAATACGACGTCTCCGCCGCCACCAACCCCTAGTGCTCCGCCACCATCGACTCCAACGCAACCTCCGCCGTCCACTACACCACCACCAACAACCACTCCGTCACCGCCTCCGCCTTCCGCTGCAACGCCGCCCACTCCTTCTCGGCCCCCGCCGACTTCCGCGCCACCTCCGGCCACCCCGTCACTGCCTCCACCGTCTACTCCCCAACCCGCCCCGCCCACTGCATCTCCCTCGCCGCCGGCTTCCACCCCTCCGCCGTCCAGGCCTTCGACTTCTCCACCTCCTCCGTCTTCTACTAGCCCTCCGTCTCCTCCAACTGGCCGTAGTCCGCCGCCACCAACTTCTCGTACGCCGTCCACTCCGTCAAGAAGTCCTCCACCTCCCTCAACGTCGTCGTCGTCGTCCTCCTCCTCTTCTAATATTTCAACTGGACTTGTTGTCGGAATTGCAATTGGTGGAGTGGTAATTGTTCTTCTGCTAAGTATATTGTGCCTTTGTTGTACGAAGAAAAGGAGAAGACGACGCGATGAAGAGGGATTTTATCCACACCCTCCGCCTGGCCCTAAAGTTGACCCTTATGCTGGTCAGCAGCAATGGCAGCACAATGGTCCTCTACCGCCTGATCCTTTAATCGGGACGGTGCCTAAGCCATCTCCTCCTCCGGTAGTTGCATCTCGACCCCCGCATTCTCCGACTGGCGTTCGTCCTCCACCTCAACCGCTCTATATGAGTAGCAGTGGAGGTTCGGGTTCTATGTATTCTGGGCCTGAAACGCCGCTCCCTCCGCCGCCTCCCCCTCCTATGGCCTTTGGTTTCTCAAAGAGTACTTTTACTTATGAGGAATTGGCAATGGCGACGGATGGCTTCTCGGATGCAAATCTCCTCGGACAAGGTGGATTCGGATATGTGCATAGAGGAGTTCTTCCTAATGGAAAGGAAGTTGCAGTCAAGCAGTTGAAAGCTGGGAGCGGGCAGGGCGAACGAGAATTTCAGGCCGAAGTTGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTAGAGTTCCATTTACATGGTAAAGGGCGGCCAACGATGGATTGGCAGACAAGACTTAAAATCGCATTAGGATCAGCAAAAGGACTAGCTTATATTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAGGCTGCTAACATATTGTTAGATTTCAAGTTTGAAGCAAAGGTTGCTGATTTTGGACTTGCAAAGTTTACTTCTGATGTCAATACCCATGTATCAACTCGAGTGATGGGTACTTTTGGGTATCTTGCACCAGAGTATGCCTCTAGTGGCAAACTTACTGAGAAATCAGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCAGTTGATATGAGTAATACTTCCATGGAAGATAGTCTTGTGGACTGGGCTAGACCGCTAATGAACCGAGCTTTAGAAGATGGAAACTTTGATGCTTTGGTTGATCCAAGGATGCAAAACAACTACAACCACAATGAGATGGCTCGCATGGTTGCCTGTGCTGCTGCTTGTGTTCGACATTCTGCTAGGCGTCGACCACGAATGAGTCAGGTAGTACGAGCGCTCGAAGGAGACACATCACTATCGGATCTCAACGAAGGAGTCAAACCCGGGCAGAGCACAATGTACAGTTCTCATGGAAGCTCAGATTATGACACTCACCAGTACAACGAGGACTTGAGAAAGTTCAGGAAGATGGCACTGGGAAGTACAGAATATGGAGCAAGCAGCGAATACAGCGGACCAACGAGCGAGTACGGTCTGTATCCTTCGGGATCGAGCAGCGAAGGGCAAACCACCAGAGAAATGGAGATGAGAACAGCAAAGAAAGAAAGTGGAGGCTTCAGTGGACGCTCTTGA | 2022 | 51.48 | MSTPTPAPTSPPATNTTSPPPPTPSAPPPSTPTQPPPSTTPPPTTTPSPPPPSAATPPTPSRPPPTSAPPPATPSLPPPSTPQPAPPTASPSPPASTPPPSRPSTSPPPPSSTSPPSPPTGRSPPPPTSRTPSTPSRSPPPPSTSSSSSSSSSNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPPGPKVDPYAGQQQWQHNGPLPPDPLIGTVPKPSPPPVVASRPPHSPTGVRPPPQPLYMSSSGGSGSMYSGPETPLPPPPPPPMAFGFSKSTFTYEELAMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKAGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLKIALGSAKGLAYIHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDMSNTSMEDSLVDWARPLMNRALEDGNFDALVDPRMQNNYNHNEMARMVACAAACVRHSARRRPRMSQVVRALEGDTSLSDLNEGVKPGQSTMYSSHGSSDYDTHQYNEDLRKFRKMALGSTEYGASSEYSGPTSEYGLYPSGSSSEGQTTREMEMRTAKKESGGFSGRS | 673 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2800321 | 2803593 | - | CmPI595203_11g002330.1 | Cmu11g0233 | 428755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 586 | 605 | - | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 1 | 142 | - | - | |
Cmu11g0233 | 673 | PRINTS | Proline rich extensin signature | 49 | 74 | - | - | |
Cmu11g0233 | 673 | PRINTS | Proline rich extensin signature | 4 | 20 | - | - | |
Cmu11g0233 | 673 | PRINTS | Proline rich extensin signature | 24 | 41 | - | - | |
Cmu11g0233 | 673 | FunFam | proline-rich receptor-like protein kinase PERK1 | 281 | 378 | - | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 582 | 607 | - | - | |
Cmu11g0233 | 673 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 128 | 620 | IPR047117 | - | |
Cmu11g0233 | 673 | SMART | serkin_6 | 303 | 539 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0233 | 673 | FunFam | Proline-rich receptor-like protein kinase PERK1 | 379 | 587 | - | - | |
Cmu11g0233 | 673 | Pfam | Protein tyrosine and serine/threonine kinase | 308 | 576 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g0233 | 673 | ProSiteProfiles | Protein kinase domain profile. | 303 | 582 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 627 | 655 | - | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 187 | 277 | - | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Cmu11g0233 | 673 | Gene3D | Transferase(Phosphotransferase) domain 1 | 379 | 589 | - | - | |
Cmu11g0233 | 673 | Gene3D | Phosphorylase Kinase; domain 1 | 282 | 378 | - | - | |
Cmu11g0233 | 673 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 423 | 435 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g0233 | 673 | SUPERFAMILY | Protein kinase-like (PK-like) | 278 | 576 | IPR011009 | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 626 | 673 | - | - | |
Cmu11g0233 | 673 | MobiDBLite | consensus disorder prediction | 1 | 155 | - | - | |
Cmu11g0233 | 673 | ProSitePatterns | Protein kinases ATP-binding region signature. | 309 | 331 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g2586 | Cmu-Chr5:34571610 | Cmu11g0233 | Cmu-Chr11:2800321 | 3.60E-132 | dispersed | |
Cmu07g0911 | Cmu-Chr7:23067305 | Cmu11g0233 | Cmu-Chr11:2800321 | 1.00E-155 | dispersed | |
Cmu07g1225 | Cmu-Chr7:27553333 | Cmu11g0233 | Cmu-Chr11:2800321 | 1.70E-78 | dispersed | |
Cmu07g1341 | Cmu-Chr7:28705310 | Cmu11g0233 | Cmu-Chr11:2800321 | 1.60E-86 | dispersed | |
Cmu11g0233 | Cmu-Chr11:2800321 | Cmu11g0452 | Cmu-Chr11:4976478 | 1.80E-161 | dispersed | |
Cmu11g1729 | Cmu-Chr11:29438639 | Cmu11g0233 | Cmu-Chr11:2800321 | 8.70E-72 | dispersed | |
Cmu09g0632 | Cmu-Chr9:5846196 | Cmu11g0233 | Cmu-Chr11:2800321 | 3.40E-67 | transposed | |
Cmu11g0233 | Cmu-Chr11:2800321 | Cmu05g0251 | Cmu-Chr5:2137975 | 3.10E-39 | wgd | |
Cmu11g0233 | Cmu-Chr11:2800321 | Cmu06g0888 | Cmu-Chr6:12121910 | 3.10E-198 | wgd | |
Cmu11g0233 | Cmu-Chr11:2800321 | Cmu09g0219 | Cmu-Chr9:2273735 | 1.40E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75908 | PF07714 | PK_Tyr_Ser-Thr | 7.90E-47 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0233 | - | - | - | 0.0 |